Austrofundulus limnaeus (annual killifish): 106533150
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Entry
106533150 CDS
T06063
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03013
Nucleocytoplasmic transport
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106533150 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
106533150 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106533150 (thoc1)
03041 Spliceosome [BR:
alim03041
]
106533150 (thoc1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106533150 (thoc1)
Spliceosome [BR:
alim03041
]
Complex C
Other components
EJC/TREX
106533150 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106533150 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
106533150
NCBI-ProteinID:
XP_013884848
UniProt:
A0A2I4CXX7
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MSPSLFNFVDAKEKFTAAARHALGGKTCKQLVNVFNQIPGNETEKKTTLDQALRGVLGDQ
IEEQKANCDDYLSLIDLSIHAVTEGICSATAPFVLLGDVLDCLPLDLCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNVTVFNKNEQETTLGQKADEKEDSMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWMLQ
DYFRNPLQCYEKFSWITFVKYSDETLAVFKSYKLDDMQASKRKMEELRGSDGKHVYFAKF
LTSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSSCVLNDDQNTWIEDTTKLVY
QLLREIPPDGDKFATMVEHILNTEENWNAWKNEGCPSFVKERTVDEKPKRPTRKRQAPED
FLGKGPDRKLFMGNDELTRLWNLNQDNMEACKAHSREFLPSLDEFFAEAIEQADPVNMVE
EEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSEE
IKTDEEDDDDNGDNLLKDSNDSPSIQSKLVTNQQMDDIAAKLGAEWKTLASQLEMNAADL
REIETDSEDVDMQAKLLLVAWQDREGTQATVENLVTALNAAGFSQIADSLNES
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgtccttgttcaattttgtcgacgctaaagagaaatttacggctgctgctaga
catgcactgggtggtaaaacctgcaaacagttagttaatgtgtttaatcagatccccgga
aatgaaacagaaaaaaagaccacattggaccaggctttgagaggtgttcttggggatcag
attgaagagcagaaggcaaactgtgatgactacctgtctctcattgacctgagtatccac
gctgttactgagggtatctgctcggccacagctccttttgtcctgctgggagacgtgctg
gactgtcttcctcttgacctttgtgacaaaatattctctttcgtggaggaaaatgtctct
acgtggaaatcgaactccttttataccgcagggaagaactatttgctgaggatgtgtaac
gatcttttaaggaggctgtccaaatctcagaacacagtattctgtggaagaatccagctt
ttcctggcccggctctttcctttgtcggaaaaatcgggcctcaacctacagagccagttt
aacttggacaacgtgacagtgtttaacaaaaatgaacaggaaaccactcttggacagaag
gcggatgaaaaagaagatagtatggaggtggaggaaggggaaatgggggaggatgatgct
cctgcaccatgttctattccaatcgactacaacctgtacagaaagttctggatgttgcag
gactactttagaaatccattgcagtgctatgaaaagttctcatggataacatttgttaag
tactcagacgagacccttgcagtgttcaagagttacaagctggacgacatgcaggcttct
aagaggaagatggaggagctgagaggatctgatgggaaacatgtttattttgccaagttc
ctcacaagtgagaagttgatggacttacagctcagcgacagcaacttcaggcgtcacatc
ctggtacaatatctcatcctctttcagtacctgaaggggcaggtcaaatttaaaagctcc
agctgcgttttgaatgacgaccaaaatacatggattgaagayacaacaaagctggtgtat
cagctgctgagagaaattcctcctgatggagataaatttgccaccatggtcgagcacatc
ctcaacacagaggaaaactggaacgcctggaaaaatgagggatgtccgagctttgtcaaa
gaaagaacagtagatgagaaacctaaaaggcccaccaggaaaagacaagctccagaggac
ttccttggaaaagggccagaccgcaarcttttcatgggaaatgatgagttgactcgactg
tggaacctgaaccaggacaacatggaggcgtgcaaggcacacagcagagagttcctgcca
tctctggatgagttctttgctgaagccattgaacaggctgacccagtcaacatggtggag
gaggagtataaggttgtgcgtaaccccaactatggctggcgggctttgaggctgctgtcc
aggagaagtccacacttctttcagccgaccaaccagaagtttaaaagcttggccgactac
ctggacagcatggttagcaaactggccaaagagctaccgaaagatattccctctgaagaa
atcaagactgatgaagaggacgacgacgataatggagacaatcttctgaaagacagcaat
gatagtccgagcattcagagcaaactggtgacaaaccagcagatggatgacattgcagcc
aaactgggtgctgagtggaagacgctggcctctcagctggagatgaacgccgccgatttg
cgggaaatcgagacggacagcgaggatgtcgacatgcaggctaaacttctgctggtggcc
tggcaggacagagagggaacacaagctactgtggagaacctggtcacagctctgaacgct
gcaggcttctcacagattgcagacagcctcaatgagtcctaa
DBGET
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