Alkalihalobacillus sp. LMS39: MM271_15300
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Entry
MM271_15300 CDS
T09200
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MM271_15300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alkl03400
]
MM271_15300
Enzymes [BR:
alkl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MM271_15300
DNA repair and recombination proteins [BR:
alkl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MM271_15300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
LamB
Motif
Other DBs
NCBI-ProteinID:
UOE96460
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Position
3080835..3082643
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AA seq
602 aa
AA seq
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MMPTLSFETPIGPDWRYEIKYDGFRCILRWQENQEIELLSKYGNDLTNQFPEIIEYCQSI
HDVIKPLLPLSLDGELVVLDNPYKGNFEHIQLRGRLKTKEKITTYSKEIPATFMAFDLLE
LHGVNYKEKSFTERKKQLEEIFSTVITDSPFLKMVTAFTEKDTVWKKVTASLGEGIIAKH
KNSKWELGKRTKTWYKIKNWRVVSAFITAYQKDNGFFHVAIYNGKKDMVPIGLFKNGLED
EQKKALVETVRKNQTKEDATYVYVNPSLCVDIQCIELYKGQLREPYFKQFRFDIGPDDCT
EEKLKLSLEPLPDTVTITNPKKLLWQDKAISKEDYLQFLRTMSSYSMPFLQNRLLTVIRF
PDGVHKEAFYQKNCPDYAPDFVQTEKADSIDYIVCNNLETLIWLGNQAAIEYHVPFETIH
TKTPTEIVFDLDPPSRNEFTLAVQAALLIKEVADGLQLTCYCKTSGNKGMQVYFPLPDNM
YSYEDTRAFTAFIAEYLISQEPKWFTTERLKKNRGNKLYVDYIQHGERKTIIAPYSARGN
EDALVATPLYWEEVNDTLSIEDFTIETVQTRVKEKGCPFASFFEAKKTQPYGPVLDFLKE
KV
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgatgccgacattgtcattcgaaaccccaattggtcctgattggcgatatgaaattaaa
tatgatggttttcgttgtattttacgttggcaagaaaatcaagaaatcgagttacttagt
aagtacggaaacgatttaacaaaccagtttcctgaaattattgaatactgtcaatccatt
catgatgtaataaaaccgttgcttccattgtctcttgacggagaacttgttgtgttggac
aacccttataaagggaattttgaacatatccaattgcgcgggcgactaaagacaaaagaa
aaaatcaccacctattccaaagaaattcccgcaacttttatggcgttcgatttattagag
ctccacggtgtaaactacaaagaaaaatcatttacagaacgtaaaaagcagctagaagag
attttttcaaccgttatcactgatagcccttttctaaaaatggtgacagcgttcactgaa
aaggataccgtttggaaaaaagtaacggcatcgctaggcgaagggatcattgcaaaacat
aaaaatagcaaatgggagcttgggaaacgaacaaaaacatggtataaaattaaaaattgg
cgtgttgtttcagcttttataacagcctatcaaaaagataatggatttttccatgtagcg
atttataacggtaaaaaagatatggttccgattggtctatttaaaaatggactagaagat
gaacaaaaaaaagcgttagtggaaactgttaggaaaaatcagacaaaagaagatgctact
tatgtttatgtgaacccgagtttgtgtgtcgatattcaatgtatagagttatataaaggg
caattacgtgaaccttattttaaacaatttcgtttcgatatagggcctgacgactgtaca
gaagaaaaactcaaattaagtttagaacctttgcctgatacagtcacgatcactaatcca
aaaaaattactatggcaagataaagcgatatcaaaagaagattatttacaatttttacgg
acgatgtcatcttactccatgccatttttacaaaaccgcttattgacggtcattcgcttt
cccgatggagttcataaagaagcgttttatcaaaaaaactgtccggattacgcacctgat
ttcgtccaaactgaaaaagccgattccattgattatattgtttgtaacaatttagaaacg
ctcatatggttaggaaatcaggcagccattgaatatcatgttccatttgaaacaattcat
acgaaaacaccaaccgaaattgtctttgatttagacccaccatcaagaaatgaattcact
cttgctgttcaagccgccttactcattaaagaagtcgctgatggtttacaactaacttgt
tattgcaaaacttccggaaataaagggatgcaagtgtatttccctttaccagacaatatg
tatagttacgaagatacaagagcctttacagcctttattgccgaatatcttatttcccaa
gagccaaaatggtttacgacggagcgcttaaagaaaaatcgtgggaataaattgtacgtc
gattatattcaacatggggaaagaaaaacgataattgctccttattcagctagaggaaat
gaagacgctttagtcgccacaccattatattgggaagaagtaaatgacactctttcgatt
gaggattttacaatcgaaacggttcaaacccgtgtaaaagaaaaaggctgtccattcgcc
tccttttttgaagcaaagaaaacacagccatatggaccagtgctcgatttcttaaaggaa
aaagtgtaa
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