Xiashengella succiniciproducens: M9189_03540
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Entry
M9189_03540 CDS
T08178
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alkq
Xiashengella succiniciproducens
Pathway
alkq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alkq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M9189_03540 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alkq03400
]
M9189_03540 (mfd)
Enzymes [BR:
alkq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M9189_03540 (mfd)
DNA repair and recombination proteins [BR:
alkq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M9189_03540 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
CdvA
Motif
Other DBs
NCBI-ProteinID:
URW80428
UniProt:
A0A9J6ZR38
LinkDB
All DBs
Position
complement(824749..828141)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSLTKALLQKYKDHPNYNEFLKWLKSPSQPIHIKGLTGSSPTLLVSALKDLRPQLVITPD
KESAGYFYYDLAQINGEDSVFFLSSSYKRSPEFGHPDSNQMILRTEALQKLREAGPGSFI
VTYTEALVEKVPGSSVIQQQTLRINKNEKTDLYFVADFLKELGFQRTDFVYEPGSYSVRG
SILDVYSFSHDDPFRIDFFGDEVESIRSFDIETQLSKEDFDTITIIPDLTADNTEDYLPL
SQALGDDFLIWIDSPVLIRDQMNRIVQKVDERNASAPREDLAELKIPASGQLADGGQLFA
GLLSRPMAILNTAHGFQPGCILTFNCSPQPSFRKNFELVEKDIQQRLQDLYRVIVLSDND
RQLERLRQIFNDRASNIEYEELNKALHEGFVDHDLRLCIYTDHQIFDRYHKFTLRTDKAR
AARQAISLRELTRLNPGDYVVHIDHGIGRFGGLVTIEENGVKQEAIQLIYRDNDVLLVNI
HSLHRISKYKGGEGEPPKVHKLGHSAWARMKEKTSKKVKDIARELIALYARRKAEPGYAF
SPDSYMQTELEASFIYEDTPDQYKATRDVKQDMESPNPMDRLVCGDVGFGKTEIAIRAAF
KAASDNKQVAVLVPTTILAFQHYRTFRDRLADFPVRIEYISRLRKTSEIREILRDTQKGK
VDILIGTHRLIGKDVQFKDLGLLIVDEEQRFGVAVKDKLKSLKVNVDTLTLSATPIPRTL
QFSLMGARDLSILNTPPANRYPIFTELHSFNEDIIKEAISYEVERGGQVFFINNRIHNIE
EIEMLINRILPKVRTVVAHGRMDGPTLEKIMLDFMDGDFDVLIATSIIESGLDIPNANTI
IINNAHQFGLSELHQLRGRVGRSNKKAFCYLLAPPLSSLTNDARRRLKILEEYSDLGSGF
QIAMQDLDIRGAGNLLGGEQSGFIADIGYETYQRILEEALLELRETEFPELKQATTGTTQ
NGRVKYVNDCIIETDEDLRFPETYISNTAERMTLYRELDNIKEEYRLDEFRKNLEDRFGT
LPQQADCLIEVVRMRIAAINLGIEKLTYKNKALRINFVSNPESPFYKSQIFGAILVWIQQ
HPKDIRIEEKEGRLRMIVPKMLSLNDCIGLIRALEAETNHSETVEGHLSH
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgacgaaggccttgttgcagaagtataaagatcaccccaattacaacgagttt
ttaaaatggctaaaaagcccctcccagcccatacatattaaaggacttactggatcctct
cccaccctcttagtatctgcattgaaggacctacgcccacagcttgtgattactcccgac
aaggaaagtgcgggttatttctactatgacctggcccagatcaatggtgaagactcggtg
ttcttcctgtcctcgtcatacaagcgctctcccgagtttggccaccccgatagcaaccag
atgatacttcgtaccgaagccctgcaaaagcttcgtgaggctggtcccggctcttttatc
gtcacatacactgaggcccttgtggaaaaggtgcccggctcatctgtaattcagcagcaa
accctcagaatcaataaaaacgaaaagaccgatctatattttgtagccgacttcctcaag
gagttaggcttccagcgcaccgacttcgtatatgagccgggcagctactcagtgcgcgga
tcgatactcgacgtatacagcttttcccacgatgaccccttccgtatcgacttctttggc
gacgaggtcgagagcatccgctccttcgacatcgagacccagctgtcaaaggaggacttt
gacacaatcaccattatccccgacctgacagccgacaataccgaggattacctgccctta
agccaggcccttggcgatgactttctgatatggattgactcgcctgtgctaatcagggat
cagatgaaccgtattgtacaaaaggtagatgaaagaaatgcatcagcaccacgggaagat
cttgccgaactgaaaatacctgcttcaggtcaattggccgacggcggccaattgtttgcc
ggcctgctaagccgaccgatggccatactcaatacagcccatgggtttcaaccgggttgc
atacttactttcaactgttcaccccagccttcattccgcaagaacttcgaacttgtagaa
aaggacatccagcagcgtctgcaggacctatacagggtgatagtcctctcagacaatgac
cgtcagcttgagcgccttcgtcagatcttcaacgacagggcttccaatatcgagtacgag
gaactcaacaaagcccttcacgaaggctttgtagatcatgacctgagactctgtatctat
accgatcaccaaatctttgaccgttatcataaatttactctccgcactgacaaggcacgt
gctgcccgtcaggctatatcgctcagggaacttacccgcctcaatccgggcgactacgtg
gtgcatatagaccatggtatcggtcgcttcgggggactggtaaccatcgaggaaaatgga
gtcaagcaggaggctattcagctaatatacagggacaatgacgtactgcttgtaaatatc
cactcgctacacaggataagcaagtacaagggcggagaaggtgagcctccaaaggtgcat
aagctgggccattcagcatgggctcgcatgaaggaaaagaccagcaagaaggtcaaggat
atagcccgtgaactaatagccctgtatgcccgtcgtaaggcagaaccgggttatgctttc
tcgcccgattcctatatgcagactgagctggaggcttcctttatctatgaggacactccc
gaccagtacaaggcaacccgcgatgtcaagcaggatatggagtcgcccaatcctatggac
agactggtctgcggtgatgtgggctttggtaagaccgagattgctatcagggctgccttc
aaggcagcaagcgacaataagcaggttgcagtgctggtaccaacaaccatccttgccttt
cagcactaccgcaccttcagggatagactcgctgacttcccggtgcgtatagaatatata
agccgtctgcgtaagacctctgaaatcagggagatactcagagacactcagaaaggtaag
gttgatatacttattggcacccaccgtctgataggcaaggatgtgcagttcaaagacctg
ggactgcttatcgtggatgaggagcaacgctttggcgttgcggtcaaggacaaactcaaa
agcctcaaggtcaacgttgacaccttgactctcagtgctacacctattccacgtacactg
cagttttcacttatgggagcccgggacctatctatactcaacactccgccggcaaaccgt
tatccgatttttaccgaactccacagctttaacgaagatattattaaggaagccatcagt
tatgaagtagagcgtggtggacaggtcttctttatcaacaacaggatacacaacatagag
gaaatagagatgcttatcaaccgcatcctgcctaaggtcagaacagtagtggcgcacggc
aggatggacggaccaacccttgaaaagataatgctcgactttatggacggggacttcgac
gtgctgatagcaaccagcattattgagtcaggtctcgatattccaaatgccaatactatc
attataaataatgcgcatcagtttggccttagcgaattgcaccagctcaggggtcgtgtg
ggacgttccaacaaaaaggccttctgctacctgcttgcaccaccactaagtagcctaacc
aatgatgcacgaaggaggctcaagatccttgaggaatactctgacctgggcagcggcttt
cagattgctatgcaggacctcgacataagaggtgcaggtaacctgctcgggggcgagcaa
agcggttttatagccgacataggttatgaaacctatcaaaggatacttgaagaagcactg
ctcgaactgcgtgagactgagtttccagaacttaaacaagcaactaccggaactacccag
aacggcagggtgaaatatgtcaacgactgtataattgagacagatgaagacctcagattc
cccgagacctatatctccaacacggcagaaagaatgaccctgtacagggaacttgacaat
attaaggaagagtaccgccttgatgagttccgtaaaaacctcgaggacaggtttggtacc
ctccctcaacaggctgactgcctgatagaggtggtaaggatgaggattgcagccatcaat
ctgggaatagaaaagttgacatacaagaacaaagcgctcagaatcaactttgttagcaat
ccggaatcgccattctacaagtcacaaatctttggagctatcctggtatggatacagcaa
catccaaaggatataaggattgaagaaaaagaaggaagactcagaatgatagtaccaaag
atgctatcgctaaacgattgcatcggccttattcgtgcgcttgaggctgaaacgaatcat
tcagaaacagttgaagggcatctttcccattaa
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