Alloactinosynnema sp. L-07: CRK57032
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Entry
CRK57032 CDS
T04489
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
alo
Alloactinosynnema sp. L-07
Pathway
alo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CRK57032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alo03400
]
CRK57032
Enzymes [BR:
alo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CRK57032
DNA repair and recombination proteins [BR:
alo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CRK57032
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CRK57032
UniProt:
A0A0H5CH83
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Position
I:complement(2107312..2109291)
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AA seq
659 aa
AA seq
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MAPAWIEPMLAKPDGGRLRTGPNWSYEYKLDGYRAAMRIAADGTTALTSRNGIDITHEFA
SLVGVLAPTLDGRAAVLDGEIVVYNDAGQVDFGAMQQRRGRYRSHVSSPRRHEAFLDVAV
RFLAFDLLQLGDQSLLTIPYDERRARLEQLAMPDPSLVSVVPAFTFAALAADRRTPQDLL
NRAAAEGFEGLVAKLRTSTYQPGKRPDSWLKHPLIQTREVIVCGWRPGQSRFTGILGGLL
LGAHNPDTGDLVYIGDVGTGFSEADRSQLQTRLETLERRAHPFAVEPPREDIRRARWVTP
TLVGEVVYRQFTRDGRLRHTAWRGLREDRVPADVTSPQSNLYGPTPAAPAKPAEQVVTSS
ARVAVQVGDRRLTLSNLDKVLYPAAGFTKGEVIRYYSLIAPVLLPHLAGRPVTTIRFPDG
VHADKFFEKNVPRGAPDWLPTVRLPSSGSRGSGDMIDYPLIYELAALVWAANLAALELHV
PQWTVAPGPTRGLPDRLVFDLDPGPGATVIDCARVAERLHEALIDRGLTPVAKTSGSKGM
QVYAAVRVSRAEQTSTYAKDLAERFAAETPDLVTARMTKTLRAGKVFIDWSQNHPAKTTI
APYSLRGRDDPTVSTPVAWPEVRASQHVHDLTFTADDVLDRVERLGDPFAALLDSSYQI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcccgcctggatcgagccgatgctggccaaacccgatggtggcaggctgcgcaca
ggcccgaactggtcctatgagtacaagctggatgggtatcgagcggcgatgcggatcgcc
gcagacggcacgacggcgctaaccagccggaacggcatcgacatcacgcacgagttcgcc
tcgctggtcggggttctcgcgccgacactcgatgggcgagcggcggtgcttgacggggag
atcgtcgtctacaacgacgcgggccaagtcgacttcggcgcgatgcaacagcgccgcggc
cgctaccgatcgcacgtcagttccccgcgccgccacgaggcattcctggatgtggcggtg
cggttcttggcgttcgacctgctgcagttgggcgaccagtcgctgctgaccattccgtat
gacgagcggcgggcgcggctggaacagttggcgatgccggacccgtcgcttgtctcggtg
gtgcctgcgttcaccttcgccgcgctggccgccgatcggcgcaccccgcaagacttgctg
aacagggccgcggccgagggcttcgagggcctggtcgccaaactccggacgtctacctac
cagccggggaagcggccagactcgtggttgaagcatccgctgatacagacccgcgaggtg
atcgtctgcggttggcggcccgggcagagccgattcaccggcatcctcggcggcctgctg
ctcggcgcccacaaccccgacactggtgacctcgtctacataggagacgtcggtaccggg
ttctccgaagccgatcggagtcagctgcagacccgtctggagacactggagcggcgggcg
cacccgttcgcggtggagccgccgcgggaggacatccggcgcgcccgctgggtcacacca
acacttgtgggtgaagtggtctaccgacaattcacccgggatggtcgactccgccacacc
gcgtggcgcggattgcgcgaagaccgtgtgccggcggatgtcacctcaccacagtcgaac
ctgtacggcccgaccccagcggccccggcgaagcctgcggagcaggttgtgacatcgagt
gcccgggtggccgtccaggtcggggaccgcaggctcaccttgtccaatctggacaaggtg
ctgtacccggcagccggattcaccaagggcgaggtgatccgctactactccctcatcgca
ccagtcctactcccccacttggcgggcagaccggtcacgaccatccgattccccgacggc
gtgcacgccgacaagttcttcgagaagaacgtcccccgcggtgcgcccgactggctgccc
accgtccgactgcccagcagcggatcccgcggtagcggtgacatgatcgactatccgctg
atctacgaacttgcagcactggtgtgggcggccaatctcgccgcgctggaactccacgtg
ccacagtggaccgtggcccccggcccgacacgaggattgcccgaccggctggtgttcgac
ctcgatcccggaccaggcgcgacagtaatcgactgcgcccgagtcgccgaacggcttcac
gaagccctcatcgaccggggactcacccctgtcgccaagaccagcggctccaaaggcatg
caggtctacgccgccgtgcgcgtctcccgcgccgagcagacgtcgacttacgccaaagac
cttgccgaacggttcgccgcggagacccccgacctggtcacagcgagaatgacgaaaaca
cttcgggcaggcaaggtattcatcgactggagccagaaccaccccgcgaaaaccaccatc
gccccgtactcactacgcggacgcgacgacccgaccgtgtccaccccggtcgcctggccc
gaagtccgcgccagccaacatgtccacgacctcaccttcaccgccgacgacgtcctcgac
cgcgtcgaacggctcggtgacccgtttgcggcactactcgacagctcctaccagatctga
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