Alloactinosynnema sp. L-07: CRK59162
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Entry
CRK59162 CDS
T04489
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
alo
Alloactinosynnema sp. L-07
Pathway
alo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRK59162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alo03021
]
CRK59162
03019 Messenger RNA biogenesis [BR:
alo03019
]
CRK59162
Transcription machinery [BR:
alo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CRK59162
Messenger RNA biogenesis [BR:
alo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CRK59162
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
CRK59162
UniProt:
A0A0H5CMS2
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All DBs
Position
I:complement(4328880..4330958)
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AA seq
692 aa
AA seq
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MSNTDLLSSDTAAESAPADKNGAPKKRAGLSGMVLAELRTLAGELGISGTTGMRKGDLIA
AIKERQGGGPGGAAATRAPRAGTEAAEPKAEAKTEPRAEARVEVERPAAAPAEAPAEKSE
DTPRDGGRDNRRRRGASRAAGSPEAVEQAPADRPVREDRPVREDRPAQAERPQTERPQGD
RQQGDRSQGDRQQGDRQQGDRQQGDRQQGDRQQGDRQQGDRQHGDRQQGERGERQGRGDR
NRDRNRQDGRQDRQDRQDRQQDNRQDRQQDNRATGPDDDDDGDRRGRRFRDRRRRGGRVE
GAGGQNDTEVREDDVLLPVAGVLDVLENYAFVRTSGYLSGPNDVYVSLSLVRKYGLRRGD
AITGLVRQPRDGEAQRQKFNPLVRVETINGLEPDAAKNRPEFTKLTPLYPNERLRLETEP
HILTTRVIDLVMPVGKGQRALIVSPPKAGKTSVLQAIANAITTNNPEVYLMVVLVDERPE
EVTDMQRSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAY
NLAAPASGRILSGGVDSTALFPPKRFLGAARNIEGGGSLTIFATALVETGSAGDTVIFEE
FKGTGNAELKLDRKIADKRIFPAVDVDPSGTRKEELLLPPDELAVTVKLRRVLHALDSQA
AIELLLDRLRKSRTNIEFLMQVAKTTPSQSDD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaataccgatctattgagcagcgacaccgccgctgagtccgcacccgcggacaag
aacggcgcgccgaaaaagcgcgccgggctttccggcatggttctcgccgagctgcgcacg
ctcgcaggtgagctgggaatctccggcaccaccggcatgcgcaagggcgacctgatcgct
gccatcaaggagcgccagggtggtggcccgggcggggccgccgccacacgggcgccccgc
gcgggcaccgaagccgcggaacccaaggccgaagccaagacagagcctcgtgccgaggcc
cgcgtcgaggtcgagcggcccgcggctgccccggccgaagcgcccgcggagaagtccgag
gacaccccgcgcgacggtgggcgggacaaccgccgccgccgtggcgccagccgtgcggcg
ggcagccccgaggccgtcgagcaggctccggccgaccgaccggtccgcgaggaccgtccg
gttcgtgaggaccgcccggcgcaggccgagcgtccccagaccgagcgtccgcagggcgac
cgccagcagggtgaccgttcccagggtgaccgccagcagggtgatcgccagcaaggcgac
cgtcagcaaggcgaccgtcagcaaggcgaccgtcagcaaggcgaccgccagcagggtgat
cgccagcatggtgaccgccagcagggcgaacgtggcgaacggcagggccgcggtgaccgc
aaccgcgatcgcaaccgtcaggacggtcgtcaggaccgtcaggaccgtcaggaccgccag
caggacaaccgccaagaccgtcagcaggacaaccgcgccaccggacccgatgacgacgac
gacggcgaccgtcggggccgtcgcttccgcgaccgccgccgccgtggcggccgggtcgag
ggcgcgggcggccagaacgacaccgaggtgcgcgaggacgacgtcctgctgcccgtcgcc
ggtgtcctggacgtgttggagaactacgcgttcgtccgcacgtcgggctacctgtccggc
ccgaacgatgtctacgtgtcgctgtcgctggtccgcaagtacggcctgcgccgcggcgac
gccatcaccggcctggtccgccagccgcgggacggcgaggcccagcggcagaagttcaac
ccgctggtccgggtggagacgatcaacggcctggagccggacgcggccaagaaccgcccc
gagttcaccaagctgacgccgctctacccgaacgagcgcctgcgtctggagaccgagccg
cacatcctgaccacgcgcgtcatcgacctggtgatgcctgtcggcaagggccagcgcgcg
ctcatcgtctcgccgccgaaggcaggcaagacctcggtcctgcaggccatcgccaacgcg
atcaccaccaacaaccctgaggtctacctcatggtggtgctggtcgacgagcggccggaa
gaggtcaccgacatgcagcgctcggtgaagggtgaggtcatcgcctccaccttcgaccga
ccgccgtcagaccacaccacggtcgcggagctgtccatcgagcgggccaagcgcctcgtc
gagatgggccacgacgtggtcgtgctgctggactcgatcacccgcctcggccgcgcgtac
aacctcgcggccccggcgtccggccgaatcctgtccggtggtgtcgactccacggccctg
ttcccgcccaagcgcttcctcggcgcggcgcgcaacatcgagggtggcggttcgctgacc
atcttcgccacggcgctggtggagaccgggtccgcgggtgacacggtgatcttcgaggag
ttcaagggcacgggcaacgccgagctcaagctcgaccggaagatcgcggacaagcgcatc
ttcccggcggtggacgtcgacccgtcgggcacgcgcaaggaagaactgctgctgcctccg
gacgagctggcggtcacggtgaagctgcgccgcgtgctgcacgcgctggattcacaggcg
gctattgagctgctgcttgaccggctgcgcaagtctcggacgaacatcgagttcttgatg
caggtggccaagacgacgccgtcgcagtctgacgactga
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