Alloactinosynnema sp. L-07: CRK61514
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Entry
CRK61514 CDS
T04489
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alo
Alloactinosynnema sp. L-07
Pathway
alo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CRK61514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alo03400
]
CRK61514
Enzymes [BR:
alo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CRK61514
DNA repair and recombination proteins [BR:
alo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CRK61514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
CRK61514
UniProt:
A0A0H5CTZ3
LinkDB
All DBs
Position
I:6632901..6636446
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AA seq
1181 aa
AA seq
DB search
MAPLHPLLEVLLPHVAAITDAAGAPALDLAGPVAARPLVVAALAEGAKSPVLAITATGRE
ADELVAVLGDLLGRDVVANFPSWETLPHERLSPRADTVGGRLAILRRLAHPAESGPLKVV
VATVRSLIQPMAPGLGELAPVYLKVGAEHDFEQVVARLADLAYARVDMVEKRGEFAVRGG
IVDLFPPTAEHPVRVEFWGDEVSEIRSFAVADQRSLPGELAEISAPPCRELLLTDDVRAR
AAALAEIHQADAHLHEMLDKLANGIPSEGMEALIPALCRGEMQLLTDVVPAGTHVLLNDP
EKIRTRAHDLVRTGQEFLEASWMAAAGGGKAPIDLGASAYRDLGDVAAHARDGDHPWWTL
SQLTDADAVVVDIRAVDSYRGDIDRAFADLRAHTATGGRAVLVVPGTGTAKRAVEQLAEA
EVAATFVEHLLDVPAPGVVTVVKGAIEDGFIVGDLVVLTESDLTGARAGTSTKDMSAKMP
SRRRNAVDPLALRTGDYVVHEQHGIGRYIEMVQRTIANATREYLVLEYASSKRGQPGDRL
FVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKQIAAELVQLYAARQAAPGH
AFGPDTPWQRELEDAFPFTETIDQLAAIDEVKADMMRGVPMDRVICGDVGYGKTEIAVRA
AFKAVQDGKQVAVLVPTTLLAQQHLNTFAGRMHSFPVTVKGLSRFTHGTDTEQTLAGLAD
GSVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPR
TLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVAAAIRRELLRDGQVFYVHNRVSS
IEKAARRLRELVPEARVVTGHGQMNEDRLEHLIQGFWEREYDVLVCTTIIETGLDISNAN
TLIVERGDMLGLAQLHQLRGRVGRGRERGYAYFLYPQDSPLTETAHDRLATIAQNTELGA
GMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYIRLVGEAVEAFRKHAGAPGTEDEEEL
ADVRVDLPVDAHIPHDYVPGERLRLEAYRKLAAAPDAAGLDAVRAELVDRYGEPPTPVVN
LLAVAAFRQTARAHGVTEVIAQGSNLRFAPVPLRDSQLVRLKRLYPKAVHKAVTDTITVP
RPTEGAAGGRIGAPVLRDRELLDWCAKFLDSLTVTPAAAGV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggctccgctgcacccgctcctcgaagtcctcctcccgcacgtcgccgccatcaccgac
gccgccggtgccccggcgctcgacctcgcgggccccgtggccgcccgcccgctcgtcgtg
gccgcgctggccgagggcgccaagagtccggtcctcgccatcaccgccaccggccgcgag
gccgacgaactcgtcgccgtgctcggtgacctgctcggccgtgacgtcgtggcgaacttc
ccgtcctgggagacgctgccccacgagcgcctctcgccgcgtgcggacaccgtcggcggg
cggctcgcgatcctgcgcaggctggcccatcccgcggagagcggcccgctcaaggtcgtc
gtggccaccgtccgcagcctgatccagccgatggcccccggcctgggcgaactggccccc
gtctacctcaaggtcggcgccgagcacgacttcgagcaggtcgtcgcccggctggccgac
ttggcctacgcccgcgtcgacatggtggagaagcgcggcgagttcgctgtgcgcggcggg
atcgtcgacctgttcccgccgaccgccgagcaccccgtccgggtcgagttctggggcgac
gaggtcagcgagatccgctcgttcgccgtggccgaccagcggtcgctgcccggtgaactc
gccgagatctccgccccgccgtgccgcgagctgctgctcaccgacgacgtccgcgcccgt
gccgccgccctggccgagatccaccaggccgacgcgcacctgcacgagatgctcgacaag
ctggccaacggcatcccgtcggagggcatggaggcgctgatcccggcgctgtgccgtggc
gagatgcagctgctcaccgacgtcgtcccggcgggcacccacgtgctgctcaacgacccg
gagaagatccgcacccgcgcccacgacctcgtccgcaccggccaggagttcctggaggcc
tcctggatggccgcggcgggcggcggcaaggccccgatcgacctcggcgcgtcggcctac
cgcgacctcggcgacgtcgccgcgcacgcccgcgacggcgaccacccgtggtggaccctc
tcccagctgaccgacgccgacgccgtggtagtcgacatccgggccgtcgactcctaccgc
ggcgatatcgaccgcgccttcgccgacctgcgggcccacaccgcgacgggtggccgggcc
gtcctggtcgtccccggcaccggtacggccaagcgcgccgtcgagcagctcgccgaggcc
gaggtcgccgccaccttcgtcgagcacctcctggatgtcccagctccgggtgtcgtcacg
gttgtcaagggcgccatcgaggacggcttcatcgtcggcgacctggtcgtgctcaccgag
tccgacctgaccggcgcccgcgccgggacgtccacaaaggacatgtcggcgaagatgccg
tcccggcgccgcaacgccgtcgacccgctcgcgctgcggaccggcgactacgtggtccac
gagcagcacggcatcggccgctacatcgagatggtccagcgcacgatcgccaacgcgacc
cgcgagtacctggtcctcgagtacgccagctccaagcgcggccagcccggcgaccggctg
ttcgtcccgaccgaccagctcgacgaggtctcccgctacgtcggcggcgagctgcccacg
ctcaacaagctcggcggctccgactggaagaacaccaaggccaaggcgaagaaggcggtc
aagcagatcgccgcggagctggtccagctctacgccgcccgccaggccgcccccggccac
gccttcggcccggacaccccgtggcagcgcgagctggaggacgccttcccgttcaccgag
accatcgaccagctcgccgccatcgacgaggtcaaggccgacatgatgcgcggcgtcccg
atggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcg
gcgttcaaggcggtgcaggacggcaagcaggtcgccgtcctggtgcccaccaccctgctc
gcccagcagcacctgaacacgttcgcgggccggatgcactcgttcccggtcacggtcaag
ggcctgtcgcggttcacccacggcaccgacaccgagcagaccctcgcggggctcgccgac
ggcagcgtcgacatcgtcatcggcacgcaccgcctgctgcagaccggcatccgctacaag
gacctcggcctcgtgatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggaacac
atcaagtccctgcggacccacgtcgacgtgctcaccatgtccgcgacgcccatcccgcga
accctggagatgtcgttggcgggcatccgtgagatgtcgaccatcctgaccccgcccgag
gaccggcacccgatcctgacctacgtcggcggctacgacgacaagcaggtcgccgccgcg
atccggcgtgagctgctgcgcgacggccaggtcttctacgtgcacaaccgtgtctcgtcg
atcgagaaggccgcccgcagactgcgcgagctggtgcctgaggcccgcgtggtcaccggg
cacggccagatgaacgaggaccgcctggagcacctgatccagggcttctgggagcgcgag
tacgacgtgctcgtctgcaccacgatcatcgagaccggcctggacatctccaacgccaac
accctgatcgtcgagcgcggcgacatgctcggcctggcccagctgcaccagctgcgcggc
agggtcggccgcggccgcgagcgcggctacgcctacttcctctacccgcaggactccccg
ctcaccgagaccgcgcacgaccggctcgccaccatcgcgcagaacaccgagctgggcgcc
ggtatggcggtggcgatgaaggacctggagatccgcggcgcgggcaacatcctcggcgcc
gagcagtccggccacatcgcgggcgtcggcttcgacctctatatccggctggtcggcgag
gctgtcgaggcgttccgcaagcacgcgggcgcgccgggcaccgaggacgaggaggaattg
gccgatgtccgcgtcgaccttcccgtcgacgcgcacatcccgcacgactacgtgccgggg
gagcggctgcgcctggaggcctaccgcaagctcgccgccgccccggacgccgccgggctc
gacgcggtcagggccgaactggtcgaccgctacggcgagccgccgaccccggtggtcaac
ctgctggccgtggccgctttccgccagaccgcgcgggcgcacggggtgaccgaggtgatc
gcgcagggcagcaacctgcgcttcgccccggtgccgctgcgcgactcgcagctcgtgcgg
ctcaagcggctgtacccgaaggcggtgcacaaggcggtcaccgacaccatcacggtgccc
cggccgaccgagggcgccgcgggcggccggatcggggcgccggtgctgcgcgaccgggag
ctgctcgactggtgcgccaagttcctcgactcgctgaccgtcaccccggcggccgcgggg
gtgtaa
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