Arcticibacterium luteifluviistationis: DJ013_16835
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Entry
DJ013_16835 CDS
T05496
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
als
Arcticibacterium luteifluviistationis
Pathway
als03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
als00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DJ013_16835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
als03400
]
DJ013_16835 (mfd)
Enzymes [BR:
als01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DJ013_16835 (mfd)
DNA repair and recombination proteins [BR:
als03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DJ013_16835 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWV99747
UniProt:
A0A2Z4GFB5
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All DBs
Position
4146672..4150028
Genome browser
AA seq
1118 aa
AA seq
DB search
MVAEEFLKIFQEDSFVQNIAEQLKDSQRVQIEGLHGSLDAVLAASFFKKTQYSGLFILPE
KEDAAYFYNDLRNLLGEENVFYFPASYKRLFEYQEIENANVLLRAELINKLNQGLENALI
VSYSEALTEKVINKKSLVANTLKLRSGETLDLNFITELLVSYDFEKTDFVYEPGQFSVRG
GIVDIFSFASDKPVRLELWGDEIDTMRFFDPETQLSIKTLEEVTIIPDVEHKLKKEERES
FFGFLPKDSQVWVKDVNYCLEIAKENFERATLSVESMVEKSGDIQVVFDADESFLTKKLI
KEDIEKFKTIEFGRRFFYNHSLRLNYPSKSQPSFNKEFKLLINDISERQSKGFSTVICSD
QSKQLTRLKRIFEELDPQNNFIAGDFSLREGFVDQQAKMVCYTDHQIFERYHRYNVKEKF
SKSKAITIKELKSLKSGDFVTHIDYGIGRFAGMEFIDVKGRKQEAIRLIYKDNDLLFVNI
HSLHKIAKYSGKEGLPPPMSKLGTGDWETKKSKVKRQVKDIAKELIALYAKRRAAPGFAF
SEDTYLQIELESSFLYDDTPDQAKATADVKEDMEKPNPMDRLVCGDVGFGKTEIAIRAAF
KAVADGKQAAVLVPTTILAMQHAKTFRERLEKLPVTVDYLNRFKSAAESTKTLKELKAGK
VDIIIGTHRLLNKKIEFKDLGLLVIDEEQKFGVKAKDRIKEIKHNVDVLTLTATPIPRTL
HFSLMGARDLSIIATPPPNRQPVTTEVKVFQEEVLRDALSYELQRGGQAFFVHNRIKDID
SIGSIIMRLVPDAKIGVAHGQMDGDKLEKIMMSFIEGDIDILISTNIIESGLDIPNANTI
IINHAHMFGMSDLHQMRGRVGRSNKKAFCYLLTPPLSGLTRDSRKRLQTLEEFSDLGDGF
KVAMRDLDIRGAGNLLGAEQSGFVNDLGYELYHKILDDAVSELKENEFKSLFEKELSAKE
FKVEDCQIETDQQILIPDSYITNISERLSVYNSIDGLKTQEELDLFKASIHDRFGKLPKE
VEDLFEIVRIRWKAETLGFEKITWKNNILKAYFVSSKHVEYYQADKFGRILDYVKVHPKK
CTLKQIKEKLVLSVQNADSIQKIETFFDSVLEHIDKKQ
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtggtagcagaagaattccttaaaatatttcaagaagacagttttgttcaaaacattgct
gaacaactaaaagattctcaacgggtacagattgaagggcttcacggaagtctggatgct
gttttggcggcgagtttctttaaaaaaacgcagtattctggtctttttattcttcctgaa
aaagaagatgccgcctatttttataacgacctcagaaatctcttaggggaagagaacgtc
ttctactttccagcctcttacaaaagactttttgagtaccaagaaattgaaaatgccaac
gttcttttacgtgccgaactcattaataagcttaatcaaggcttagaaaatgcacttata
gtttcatactctgaagcacttacagaaaaagtaataaacaagaaaagtttagtagccaac
accttaaaactaagaagtggcgaaaccttagaccttaatttcattaccgaactgttggtt
tcatacgattttgaaaagactgacttcgtttatgaacctggccagttttcggttcgtggt
ggtatcgtagatattttctcgtttgcttctgacaaacctgttcgtttagaactttggggt
gacgaaattgataccatgcgtttctttgatccagaaacacagttatctataaaaacgctg
gaagaggttaccatcattccagatgttgaacataaactaaaaaaagaagaaagagaatcc
ttttttggctttcttccaaaagattctcaagtctgggttaaagacgttaactattgccta
gaaatagcaaaagaaaactttgaaagagccacgctttctgttgaaagtatggtggaaaaa
agtggtgatattcaggtcgtttttgatgcagacgagagttttctgacaaaaaaacttatc
aaagaagacattgaaaagtttaaaaccatcgagtttggtaggaggttcttttataaccat
tcgcttaggctcaactatccttctaaatctcaaccatcctttaataaagagttcaagcta
ttaataaacgatatttcggagagacagtcaaaaggttttagcactgttatatgttctgac
cagagcaagcaattaactaggcttaaaaggatatttgaagagcttgaccctcaaaataac
tttattgcaggtgacttttctttaagagaaggatttgtggaccagcaggcaaaaatggtt
tgttatacagaccatcaaatttttgaacgctatcatcgctataacgtcaaagagaagttt
tctaagtcaaaagcaattaccataaaagagcttaaatctcttaaatctggtgattttgta
acgcatattgactacggaattggacgttttgctggcatggagttcattgatgtaaaagga
agaaagcaagaagctatccgactgatatacaaagacaatgatttactctttgtcaatatt
cactccttacacaaaatagcaaaatactcaggaaaagaggggcttccaccacctatgagt
aagcttggaacgggagattgggaaaccaagaaaagcaaagttaaaagacaggttaaggat
attgcgaaagagttaatagctctttacgccaaaagaagagctgcccctggttttgctttt
agtgaagacacttatttacagatagagctagagtcttctttcctttatgacgatacacca
gaccaggccaaagccacagctgatgtaaaagaagacatggaaaagcctaacccaatggat
aggctagtgtgtggcgatgttggttttggtaaaacagaaattgcaattagagcagcattt
aaggctgtagccgacggaaaacaagctgcagtgctcgttcctaccactattttagccatg
cagcatgctaaaactttcagagaaagacttgaaaaactacccgtaacggtagactattta
aacagatttaagtcggctgcagaatcgactaaaacgctgaaagagttaaaagccgggaag
gttgacatcattattggaacgcatagactgctcaataagaaaattgaattcaaagattta
ggcttacttgttattgatgaagagcaaaaattcggtgtaaaagcgaaggatagaatcaaa
gaaataaagcataatgtggatgtgctaacgcttacagctacgccaattccaaggacactt
catttctctttaatgggggctcgtgatttgtcaattattgctacaccgccaccaaataga
cagcctgtaactaccgaagtaaaagtttttcaagaagaagttttaagagatgctctttct
tatgaattacagcgaggtggtcaagcattctttgtgcataatcgtattaaagacattgat
tccataggaagtattatcatgaggctggtgcctgacgcaaaaattggcgtagcacatggc
caaatggacggcgacaagttagaaaaaatcatgatgtcattcattgaaggcgatattgac
attcttatttctaccaatattattgaatctggtctagatattcctaatgccaataccatt
atcattaaccatgcacacatgtttggtatgtctgatttgcaccaaatgcgtggtagggta
ggacgttctaataaaaaggccttttgttatttactaacgcctccattgtctggattgaca
agagattctagaaaaagactccaaactttagaagaattctccgacttgggtgacggattt
aaagtagccatgagagacctagatataaggggagcaggaaaccttttgggtgccgagcaa
agtggttttgtaaatgacttaggttatgaactttatcataaaattcttgatgatgcagtt
tctgaattaaaagaaaatgaattcaaatcgctgtttgagaaagaactttctgccaaagaa
tttaaagtagaagactgtcaaatagaaacagaccaacaaattcttattccggatagttat
atcactaatatttctgaaaggttatctgtttataactccattgatggtttaaaaacccaa
gaagagcttgatttattcaaagcatctattcatgataggtttggaaagcttccgaaagaa
gtggaagatctatttgaaatagtgcgaattagatggaaagcagaaaccttaggttttgaa
aaaataacgtggaaaaataatatcctgaaagcctatttcgtttcatcaaagcacgtcgaa
tattatcaagctgataaatttggcagaattcttgattacgttaaggtgcaccctaaaaag
tgcacactgaaacaaatcaaagaaaagctcgttttaagcgttcagaacgctgattctatt
caaaaaatagaaactttctttgattcagttttagaacatattgataaaaagcaatag
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