Constantimarinum furrinae: ALE3EI_1076
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Entry
ALE3EI_1076 CDS
T06763
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alti
Constantimarinum furrinae
Pathway
alti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ALE3EI_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alti03400
]
ALE3EI_1076
Enzymes [BR:
alti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALE3EI_1076
DNA repair and recombination proteins [BR:
alti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ALE3EI_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
QNJ97649
UniProt:
A0A7G8PTI3
LinkDB
All DBs
Position
complement(1173086..1176481)
Genome browser
AA seq
1131 aa
AA seq
DB search
MFLWFIKFLNDLSLPSMSKAVVSSLFAQSSQTRKLRDIIARSSPKTIVSGLAGSSLSLVI
AEVFKTSEVPFLIVLNDKEEAAYHLNDLENLLGDQNVLFYPGSYRRPYQIEETDNANVLL
RSEVLNRINSRKKPAIIVTYPEALFEKVVTRKELEKNTLKLKVGEEVSIDFVNEVLFAYN
FKRTDFVTEPGEFSVRGGILDVFSFSNDEPYRIEFFGDEVDSIRTFDVETQLSDVQLKKI
SIIPNVENKLLDETRESFLMYIASKTVVCLKNEELLSSSIDKLFKKATEAYTDLVSEIKR
TEPNELFCTSSLLERQLEDFTKLVFKNKSEDAAVKFHTRPQPSFNKQFNLLIENLNSNAG
SGYKNYIFCSSEQQAKRFHDIFDDAEQQVSQYETIVFPLFQGFIDDDARNVCYTDHEIFE
RYHKFQLKNGYAKKQAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKQQEAIKLV
YGERDILYLSIHSLHKITKYNGKDGKEPKIYKLGSAAWKKLKQKTKTRVKQIAFNLIELY
AKRRLQKGFAYDPDSYLQHELESSFIYEDTPDQVTATEDVKRDMENERPMDRLVCGDVGF
GKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHYKTFSERLAEMPVKVDYLNRFRSAKQR
RSVLEGLENGTLDIVIGTHQLVNKTVKFKDLGLLIIDEEQKFGVAVKDKLKTIKENVDTL
TLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIETHVVRFGEENIRDAIRYEISRGGQV
FFVHNRIENIKEVAGLIQRLVPDAKIGIGHGQMEGKKLEQLMLAFMNNEFDVLVSTTIIE
SGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARKRITA
LEQFSELGSGLNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILSEAIDELKEKEFK
DLYTGSEHEKTAFVKETTIDTDFELLFPDDYINNITERLNLYTKLNAVENEEQLLKFENE
LLDRFGELPKQAEDLLNSVRIKWIAIAMGLEKVIMKKGKLIGYFVSDQQSAFYQSNSFTE
VLQYVQSHPQQVTMKEKQTRNGLRLLLSFDRITSVDKALKVLQPFHQTLVS
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
gtgttcctatggtttataaaatttctgaacgacctatctttgccgtccatgagcaaagca
gtagtatcttcgctttttgcacagtcttcgcaaacccgaaaactgagggatattattgcc
cgatcttcacccaagacgattgtttcaggcttggcgggctcgtccttatcgcttgttatt
gctgaagtttttaagacttcggaagttccgtttctcatagtgctgaacgacaaagaagaa
gctgcctatcacctcaatgacctcgaaaacctgttgggtgatcaaaatgtattgttctat
ccggggagttaccgcagaccttatcagattgaagagaccgataacgcgaatgtattgttg
cgttctgaagtattaaaccgtattaattcgcgcaaaaaaccggccatcatcgtaacctac
ccggaggcattgttcgaaaaggtagtgactcgaaaagaactggaaaagaataccttaaaa
ctgaaggttggtgaagaggtttccatcgattttgtaaatgaagtccttttcgcatacaat
tttaagcgcaccgattttgtgacagaacccggcgaattctcggtccgaggtggaattttg
gatgtattttccttcagtaatgacgaaccctaccggatcgaattttttggagatgaagtt
gacagcatccgtactttcgatgtggaaactcaattgtcagacgttcagcttaagaaaata
tcaatcatccccaatgtggaaaacaaattgctggatgaaacccgtgaaagtttcttaatg
tatatcgcctccaaaaccgtggtgtgtttaaagaacgaagaattgttgagcagtagtata
gataagctcttcaaaaaggcgaccgaagcctataccgatctcgtttcagaaataaaaaga
accgaacccaacgaacttttttgtacctcctcgcttttagaacggcaattggaagatttt
acaaagcttgtgtttaaaaacaagtcggaagatgcggcagtgaaatttcatacgcgtcca
caaccttcattcaacaaacagttcaatttgcttattgaaaacctgaactccaatgccggt
tcgggatataaaaactatattttctgtagcagcgaacagcaagccaagcggtttcacgat
atttttgatgatgccgaacaacaggtttctcagtatgagaccatcgtctttcctttgttt
caaggatttattgatgatgatgccagaaatgtttgttataccgatcatgagatcttcgag
cggtatcataaatttcagctaaagaacggttatgccaaaaaacaggcgatcactctaaaa
gaactaaccaatctggaagtgggtgattatgttactcatatcgaccacggaataggaaag
tttggcggactccaaaaaattgacgtggagggcaaacaacaggaagccatcaagctcgtt
tacggcgaaagagatatcctatacctaagcattcattccctccacaaaatcaccaaatac
aacggcaaggacggaaaagagccgaagatctacaaactgggaagtgcggcatggaaaaaa
ctgaaacaaaaaaccaaaacccgcgtaaaacagatcgcgttcaatttaattgaattatac
gcaaagcgcaggcttcagaagggatttgcttacgaccccgatagttatctgcaacacgaa
ttggaatcttcatttatctatgaagataccccagatcaggttacggctactgaagatgta
aaacgggatatggagaatgagcgacctatggataggctcgtatgcggagatgttggcttc
ggaaagaccgaagtagccattagagcagcctttaaagcggtcgataatggcaaacaggtc
gctgtattggttcccactaccatactggcctttcagcattataaaacattttctgaacga
ctcgcagaaatgcccgtaaaagtagattacctgaatcgttttcgaagtgccaaacaaaga
cgatctgtgctggaaggactcgaaaacggaacgctggatattgttattggaacccatcaa
ttggtcaataaaaccgtaaaatttaaggatctcggactgcttataatcgatgaggaacaa
aaattcggggttgcagtgaaagacaaattaaaaaccatcaaggaaaatgtcgatacctta
acactaaccgccactcctatcccgcgtacgctgcaattcagtttaatggcagcccgagat
ctttcggtaattaataccccgccaccaaacagataccccatagaaacccatgtggtaagg
tttggagaagaaaacatacgggacgccattagatacgaaatatcccgtggcggacaagta
ttctttgtgcataatagaatagagaacatcaaagaagttgcagggctaatacagcgattg
gttcccgatgctaagatcgggatcggtcacgggcagatggaaggaaagaaactggagcaa
cttatgctggcgtttatgaataatgaatttgatgtcttggtctctacaaccattatagaa
agcggattggacgtgccaaacgccaacaccatttttattaataatgccaacaactttggg
cttagcgacttgcatcagatgcggggaagggttggccgaagcaacaaaaaggcgttctgt
tattttatcactccaccctattcggctatgaccgaagatgccaggaaacgaatcactgcg
cttgaacaattcagtgagttgggaagcggactcaacatcgccatgaaggatcttgagata
cgaggcgccggagatctgctgggaggagagcaaagcggtttcattaacgaaataggtttc
gaaacctatcaaaaaattctttccgaagccattgacgagctaaaagaaaaggaatttaaa
gacctgtatacaggttccgaacacgagaaaacggcctttgtaaaggaaacaacgatcgac
accgattttgaattgctgtttcccgatgattacatcaataatataacggaaagactaaac
ctgtataccaaactgaacgctgtagagaatgaagagcaactcctaaaatttgaaaatgaa
ttgctcgatcgttttggcgaacttccgaaacaggccgaagatctgctaaatagtgtgaga
attaaatggatcgctatagccatggggctcgagaaagtgatcatgaaaaaggggaaactt
atagggtactttgtgagtgaccagcaaagtgcattttatcagagtaattcgtttactgaa
gtgttacagtatgtgcagagccatccgcagcaggttacgatgaaggaaaagcaaacccgc
aacggattgcgattgttgctttcttttgacaggatcacctcggtggataaggcactgaaa
gttctacagccgtttcatcaaaccctggtttcttaa
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