Algibacter luteus: O5O44_02180
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Entry
O5O44_02180 CDS
T09147
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alut
Algibacter luteus
Pathway
alut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O5O44_02180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alut03400
]
O5O44_02180 (mfd)
Enzymes [BR:
alut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O5O44_02180 (mfd)
DNA repair and recombination proteins [BR:
alut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O5O44_02180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WJJ97192
LinkDB
All DBs
Position
492705..496082
Genome browser
AA seq
1125 aa
AA seq
DB search
MSKTLISQTYLQTLQKQNLQNAIAQTQAKTHLKGLVGSSLSFVIAAVFKEVQKPFLLVFN
DKEEAAHYLNDLEQLLSDKDVLFYPGSYRRPYEIEETDNANVLLRAEVLNRINSQKKPAI
IVTYPDALFEQVVTRKELERHTLKVGVNDKLSIDFVNEVLFDYQFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSIEQIKKINIIPNVANKLLQESRQ
SFLKYIAQKTIVCIKNADLLFSRIDDFYAKAEEAFKTLSEDIKHAEPHELFCDAALLKKQ
LLDFSIVEFGSSAIMSSTSAVPSTGSVETSQHIEFNTTPQPAFNKQFNLLIENLNANSEN
GYTNYIACVSEQQAKRFHDIFDDSHLDVKAYQTIILSLHQGFIDHDNKIACYTDHQIFER
YHKFHLKNGYAKKQAITLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLIY
GERDVLYLSIHSLHKITKFNGKDGKPPKIYKLGSNAWKTLKQKTKARVKHVAFNLIKLYA
KRKTEKGYQYNPDSYMQHELEASFIYEDTPDQSTATADIKADMESERPMDRLICGDVGFG
KTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHSRTFKDRLKDFPLTVDYLNRFRTAKEKR
ETLEALDQGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLT
LTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESHVIRFSEETIRDAISYEIQRGGQIF
FIHNRIENIKEVAGMLQRLVPDAKIGIGHGRMEGKKLERLMLSFMDGEFDVLVSTTIVES
GLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRITAL
EQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKENEFKD
LYNDDNSEKVYVKDVTIDTDFELLFPDSYVNNIAERLNLYTQLNNLKTEADLITFEKELI
DRFGELPKQVTDLLNSVQIKWLATKIGFEKIIMKKGKLIGYFINDQQSSFYQSHNFTKVL
QFVQTHPNACKMKEKQTRSGLRLMLTFENIKSVKKALEVLQPIVA
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaacccttatctctcaaacctatttacagactttgcaaaagcaaaatctgcaa
aatgctattgcccaaacccaagcaaaaacacatttaaaaggcctcgtaggatcttcatta
tcctttgttattgctgctgtttttaaagaggttcaaaagccttttttattagtgtttaac
gacaaagaagaggcagcgcattaccttaacgatttagaacaacttttaagcgataaagat
gtacttttctacccaggaagctacagaaggccatacgaaattgaagaaactgataatgcc
aatgtattattacgcgctgaagttttaaaccgcatcaactcacaaaaaaaaccagcaatt
attgttacttatcccgatgcacttttcgagcaggtggtaacacgaaaagaactggaacga
catactctaaaagttggtgtaaacgataagttatcaatcgattttgtaaacgaagtcctt
tttgattatcaatttaaacgtgtcgattttgtaaccgaacctggagagttttcagtgcgt
ggtggtattgtagatgtattttcattctcgcacgacgagccttatcgtatcgaatttttt
ggcgatgaggttgatagtatccgtacattcgatgtagaaacacaactgtccatcgagcaa
ataaaaaaaatcaacatcatacccaatgttgccaataaattattgcaagaaagcaggcaa
agtttcttaaaatacatcgctcaaaaaacaatagtgtgtataaaaaatgccgatttactt
ttttctcgaatcgacgatttttatgcaaaagccgaagaagcctttaaaaccctttcagaa
gatataaaacatgccgaacctcacgaattattttgtgatgccgcattactaaaaaagcaa
ttacttgatttctctattgttgaatttggaagttctgctatcatgtcgagtacttctgct
gtgccaagcacaggctccgtcgagacttctcaacatatagaatttaacaccacaccacaa
cccgcatttaacaagcaatttaatttattaattgaaaatttaaatgctaattccgagaac
ggttatactaattatatagcttgtgttagcgaacagcaagctaaacggtttcatgatatt
tttgacgattctcatctcgatgttaaagcatatcaaactataattttatcattacaccag
ggttttatagaccatgataataaaatagcctgttataccgatcatcaaatttttgagcgc
taccataagtttcatttaaaaaacggatatgctaaaaaacaggccataactttaaaagag
ctcaccaatttagatattggcgattatgtaacgcacatagatcatggtattgggcgtttt
ggcggacttcaaaaaatagatgtagaaggtaaaaagcaagaagccataaaacttatttat
ggcgagcgcgatgtattgtatttaagtattcactcgcttcataaaatcactaaatttaat
ggtaaagatggcaaaccacctaaaatttacaaattagggagtaatgcttggaaaacctta
aaacaaaaaacaaaagcccgtgtaaaacacgtcgctttcaacttaataaaactctacgca
aaacgtaaaaccgaaaaaggctatcaatacaatcccgatagttacatgcaacacgaactg
gaagcttcttttatttatgaagacacccccgatcaaagtactgcaacggccgatattaaa
gccgatatggaaagtgagcgccccatggatagacttatttgtggcgatgtaggtttcgga
aaaacagaagttgcaattcgtgcagcatttaaagcggtagataatggtaaacaagtagct
gtattggtgccaactactattttagcatatcaacactcaaggacctttaaagaccgctta
aaagacttccctttaaccgttgattatctaaaccgatttagaaccgcgaaagaaaaacga
gaaaccttagaagctctagatcaaggtaaagttgatattatcattggtacccatcaactc
gtaaataaaaacgtaaagtttaaagatttaggcttacttattgtcgatgaggaacaaaaa
tttggagttgctgtaaaagaaaagctaaaaaccttaaaagataacgttgatgtactaacc
ttaaccgcaacaccaatacctagaacgcttcagtttagtttaatggctgcgagagattta
tcggttattacaacaccccctccaaatcgataccctatcgaaagtcatgttattcgtttt
agcgaagaaactattcgtgatgctattagttacgaaattcaacgtggtggacaaatattc
ttcattcataacagaatcgagaatataaaagaggtagcaggcatgttacaacgcctagtg
cctgatgctaaaattggtattggtcatgggcgaatggaaggtaaaaaattagaacgactc
atgctttcgtttatggatggtgagtttgatgttttagtaagcactaccattgtagaaagt
ggtttagatgtgccaaacgccaacaccatttttataaataacgcgaataattttgggctt
agcgatttgcaccaaatgcgcggacgagtaggacgtagcaacaaaaaggcattttgttat
ttcattactccagaatattcagcaatgacggatgatgctagaaaacgtatcaccgcctta
gagcaatttaccgaattaggtagcgggttcaacattgccatgaaagatctagaaattaga
ggggctggcgatttactgggtggtgaacaaagtgggtttataaatgaaataggatttgat
acctatcagaaaatattaaatgaagcgattgatgagttgaaagagaacgagtttaaagac
ttgtataatgatgataactctgagaaagtttatgtaaaagatgtgacgatagacacagat
tttgaattgttgtttccagatagctatgttaataatattgctgaaagactgaacctttat
acccaattaaacaacttaaaaactgaagctgatttgattacctttgaaaaggaattgata
gaccgttttggagaattacccaaacaagtgaccgatttgttaaacagtgtccaaataaag
tggttagctactaaaattggatttgaaaaaatcatcatgaaaaaaggtaagttaataggt
tattttattaacgaccaacagagtagtttttaccaaagtcataattttactaaagtgtta
cagtttgtacaaactcatcctaacgcgtgtaaaatgaaagaaaaacaaacccgaagtggt
ttacgattaatgctaactttcgagaatattaaatctgtaaaaaaagcgttagaggtttta
caacctattgtggcttga
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