Allochromatium vinosum: Alvin_3098
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Entry
Alvin_3098 CDS
T01168
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
alv
Allochromatium vinosum
Pathway
alv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Alvin_3098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alv03400
]
Alvin_3098
Enzymes [BR:
alv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Alvin_3098
DNA repair and recombination proteins [BR:
alv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Alvin_3098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Regulator_TrmB
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ADC63997
UniProt:
D3RS60
LinkDB
All DBs
Position
3489678..3493532
Genome browser
AA seq
1284 aa
AA seq
DB search
MNTTIQRLNPLEVPLHGSRLIEASAGTGKTFTLAMLYLRLVLGHGGETAFARQLMPPEIL
VVTFTNAATEELRDRIRRRLVEASLVFRNQSSPGSSDPLLLDLRDQMAGGDLAHSARRLE
LAAEWMDEAAISTIHAWCYRMLREHAFDSANAFEQTLENDDAERLQHAAEDYWRTFLLGL
PAERLEPILEQWSQPSDLAKAVRGLLSLAEYLPPIADPPDEIVGRCLETRRHTIATLKTD
WRTQDHIAALERLFEQAVKNKAFKQPSLNKTHRAKVLDGLRVWLETPDQTEPDIFGGQSW
QRMSSLAIAEIWNDPAKAPVDDPACRALADLHETLTTLPDPTEDLLTHAVHWLKSHVERE
KRQSAILTQNDLLIRLDQALQGEVRERLAAAIRRQFPVALVDEFQDTDPLQYRIFSSIYE
IQANHAATGFFMIGDPKQAIYAFRGADIHTYLIARAATQGRHYTLDVNYRSSTGLITAVN
ALFEHGERTATHGAFLFREPDGQGNPVPFHPARPRDQAERTLTIDGRPCPPLQGWVIPPG
PSGKLNKDAYRARTAEAAARAIAELLRLGQAGRALLPVGQDGERPLEPSDLAVLVNNRNE
ADAIRTELRRLDVASVYLSERGNVFDTQIARDLAVLLRAIADPFDDRLMRQALATRLLGQ
GLTDLDRLNRDELHWETQGERLRDLNGRWRRQGFLPMLYRLIGEFRIAARLLGTTDGERA
MTDLLHLGELLQRASEELDGEQALVRFLEEAIADSDAATGETAEARQLRLESDARLVRVV
TIHKSKGLEYPLVFLPFIADCRRTQSKDRPLKTHDAAHRLQVHLGGDDALVAQADRERLG
EDLRKLYVGLTRARHANWLGLGAISDLEHSALGYLLGLDGQTVEWSGDDQPETEGSGSEA
QGTSNGDLSARLRRLSCVTLIDPPAADPAPYQAEAEVELEGARPAPDWRPRAWWISSYSA
LSRGAHLADSEDLAAGVWAASETSRPVSPADAVETADDETVREELAETRTPETEMQTRSL
GTGRLHDFPRGGRYGTFLHGLLEWAANLRAPTRPTGPARPGFAAALEAAQARRRMLTQRC
ASRRLSDWVEPLDAWLIELLDRTWHLDALAPPDGAVPQLRLADLDPRRYQVELEFWIEAS
RVDLCALDRVIIRHTLDGRERPELAGSYLNGMLKGFIDLVFEHQGRYYLLDWKSNWLGPD
DSAYSPEAMRAAIAERRYDLQYVLYLLALHRQLKARLPDYDYDRHLGGAIYVFLRGGQAA
SQGLFMDRPDRALIETLDRLFAGD
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgaataccacgatccagcgactgaacccgctcgaagtccccctgcacggctcgcgtctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccatgctctatctgcgcctg
gtcctggggcacggcggcgaaacggccttcgctcgccagctcatgccgcccgagatcctg
gtcgtgaccttcaccaatgccgcgaccgaagagctgcgcgaccgcatccgccgccgactg
gtggaagcctcactggtctttcgcaatcagtcgtcacccggttcatccgaccccctgctg
ctcgacctgcgcgaccagatggccggcggcgatctcgcacactccgcccgacgcctggaa
ctggccgccgaatggatggatgaggcggcgatctcgaccatccatgcctggtgctaccgg
atgctgcgcgaacacgccttcgacagcgccaacgccttcgagcagacgctggagaacgac
gacgccgaacgtctgcaacacgccgccgaggactactggcgcaccttcctgctcggactt
cccgccgagcgtctggaacccatactggagcagtggtcgcagccatcggatctggccaag
gcggtccgaggtctgctgtccctggccgagtatctgccgccgatcgccgacccgccggac
gagatcgtcggacgctgtctggagacccgccgacacacgatcgccacgctcaagaccgac
tggcgcacgcaggatcatatcgccgccctggagcgactcttcgagcaggcagtcaagaac
aaggccttcaagcaaccctcgctcaacaagacccaccgcgccaaggtgctggatggcttg
cgggtctggctggagacgccggatcagaccgaacccgacatcttcggcggccagtcctgg
caacggatgtcatcgctggccatcgccgaaatctggaacgatcccgccaaggccccggtc
gacgatccggcctgccgcgcgctggccgacctgcatgaaacactcaccaccctgcccgat
cccaccgaggatctgctgacccacgccgtccactggctcaagagccacgtcgagcgcgag
aagcgccaaagcgcgatcctgactcagaacgacctgctgatccggctcgatcaggcgctc
cagggcgaggttcgcgaacgcctcgccgccgccatccgccgacagttcccggtcgccctg
gtcgacgagttccaggacaccgacccgctccagtaccgcatcttctcgtccatctacgag
attcaggccaatcacgccgcgaccggattcttcatgatcggcgaccccaagcaggcgatc
tatgccttccgtggcgccgacatccacacctatctgatcgcgcgcgccgccacccagggc
cgtcactacacgctggacgtcaactatcgctcctcgaccggcctgatcacggcggtcaac
gccctcttcgagcatggcgagcgcaccgccacgcacggcgccttcctgtttcgcgaaccg
gacggccagggcaacccggttcccttccatcccgcgcgaccgcgcgatcaggccgagcgc
accctgaccatcgacggccggccctgtccgccgctccagggctgggtcatcccgcccggc
cccagcggcaagctgaacaaggacgcctatcgcgcgcgcaccgccgaggccgccgcccgc
gccatcgccgagctgctgcggctcggacaggcgggacgcgccctgttgcctgtgggtcag
gacggcgaacgtccgctcgaacccagcgatctggcggttctggtcaacaatcgcaacgaa
gccgacgccatccgcaccgagctgcgccggctcgacgtggccagcgtctacctctccgag
cgcggcaacgtcttcgacacccaaatcgcacgcgatctggcggtgctgctgcgcgccatc
gccgatcccttcgacgaccggctgatgcgtcaggcattggccacccgcctgctcggccag
ggcttgacggatctggaccggctcaatcgcgacgaactccattgggagacccagggcgag
cggctgcgcgacctcaacggacgctggcgtcgtcagggattcctgcccatgctctaccgg
ctgatcggcgagttccggatcgccgcccgtctgctcggaaccacggacggcgagcgggcc
atgacggatctcctgcacctgggcgaactgctccagcgcgcgagcgaggaactcgacggc
gaacaggcgctggtgcgttttctcgaagaagcgatcgccgacagtgacgcggccaccggc
gagacagccgaggcgcgtcagctgcggctcgaaagtgatgcgcgtctggtgcgtgtcgtc
accatccacaaatccaagggactcgaatatccgctggtgttcctgcccttcatcgccgac
tgccggcgcacccagtccaaggatcgaccgctcaagacccatgacgccgcgcatcggctc
caggtgcatctgggcggagacgacgcgctcgtcgcccaggccgaccgcgagcgtctgggc
gaggatctgcgcaagctctatgtgggcctgacgcgcgcacgtcacgccaactggctgggg
ctgggggcgatctcggatctcgaacactcggcgctcggttatctgctcggactcgacggc
cagacggtcgagtggtccggggacgatcagcctgaaaccgagggttcggggagcgaggcc
cagggaaccagcaacggcgatctgtccgcccgactgcgccgactgtcctgcgtgaccctg
atcgatccgcccgccgccgatcccgcgccctatcaggccgaggcggaggtcgaactcgaa
ggcgcccgccccgcgcccgactggcgcccgcgtgcctggtggatcagcagttactcggcg
ctgagccggggcgcgcacctggccgacagtgaagatctcgcggccggcgtatgggccgcg
tccgagacctccagacccgtatcgccggccgacgccgtcgaaacggccgacgatgagacg
gtgcgcgaggaactggccgagacacgcacacccgagaccgagatgcaaacccgctcgctc
ggcaccggccggttgcacgacttcccgcgtggcgggcgttacggcaccttcctgcatggg
cttctggagtgggcggcgaacctgcgtgctccgacccgcccgaccggcccggcccgaccg
ggcttcgctgccgcgctcgaagccgcccaggcccgccgccggatgctcacgcaacgctgc
gcctcccgccggctgagcgactgggtcgaaccgctcgatgcgtggctgatcgaactgctc
gaccgcacctggcacctcgacgcgctcgctccacccgacggcgcggttccacaactgcgg
ctcgccgatctcgatccgcgtcgctatcaggtcgagctggagttctggatcgaggccagc
cgggtcgacctgtgcgcgctcgatcgggtgatcatccggcacaccctcgacggccgcgaa
cggcccgaactcgccggctcctatctcaacgggatgctcaaaggcttcatcgatctggtg
ttcgaacaccagggacgctattacctgctggactggaaatccaactggctcggtcccgat
gacagcgcctacagcccggaggccatgcgcgcggccatcgccgagcggcgctacgatctg
caatacgtcctctacctgctcgccctgcaccgtcagctcaaggcgcgtctgccggactac
gactacgaccgccatctcggcggggcgatctatgtctttctgcgcggcggacaggccgcg
agccagggactgttcatggaccgaccggatcgagcactgatcgagacgctcgaccgactg
tttgcaggagactga
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