Allobranchiibius sp. GilTou73: LVQ62_00105
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Entry
LVQ62_00105 CDS
T07800
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alx
Allobranchiibius sp. GilTou73
Pathway
alx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVQ62_00105 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alx03400
]
LVQ62_00105 (mfd)
Enzymes [BR:
alx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVQ62_00105 (mfd)
DNA repair and recombination proteins [BR:
alx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVQ62_00105 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Glyco_tran_WecG
RecG_dom3_C
UB2H
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UIJ34858
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All DBs
Position
complement(20637..24224)
Genome browser
AA seq
1195 aa
AA seq
DB search
MRLDPLLDLLSGDPAVRRVLDLRSSADVVDVAASPGARAPLLSLLTRPGDGARVPILAVT
ATGREAGDLSEALRSLLPEHAVAEFPSWETLPHERLSPRSDTVGRRLALLRRLAHPDHAE
HAEHGPIDVVVASVRAVLQPIAHGLGDLQPVELRPGTDARLEDVVEALADAAYARVDMVE
RRGEFAVRGGILDVFPPTEEHPQRVEFWGDTVEEVRWFKVADQRSLEIAEGGLWAPPCRE
LLLTTAVRDRARELAPQLAGVSDMLEKVAEGIAVEGMESLSPILLGDAMQPLLDVLLPGT
HVVLCDPERVRTRAADLVTTSEEFLDASWANAAAGNVVPVDLRGALGTASYWSLSQLRDH
ALDTGRPWWSMSSFSSDEELVEFAEDELPGERITLHTQEIPAYRSNTEHAVDDLRKWAAE
GQRVLVVTEGPGLAKRVTEVLSENDVTTRALGPLDPGMVEVSTGCLGRGFALPSSDLVVV
TEADLTGSRGTSGSTKDMRRMPARRRNVVDPLQLRPGDYVVHEQHGVGRFVEMMQRSVGG
ATREYLVLEYAASKRGQPGDRLFVPTDQLDQVTRYVGGELPTLNRMGGSDWQTTKSRAKR
HVRQIAGELIRLYSARMATEGHAFAPDSPWQHELEDAFAYIETPDQLSSIDEVKADMEKS
VPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLCPTTLLVKQHVQTFTERYAGFPVV
VKALSRFQSDREAREVIEGLKGGGVDLVIGTHRLLSKEVQYKDLGLVVVDEEQRFGVEHK
EQLKQMRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGWDEKQIG
AAVRRELMREGQVFFIHNKVATIEKAATRLRELVPEARVVTAHGKMPEQRLEDVVVDFWE
RRADVLVCTTIVETGLDISNANTLIVERADLMGLSQLHQLRGRVGRGRERAYAYFLFPPE
KPLTETAHDRLQTIASHTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMV
GEAVADFRGEKDTTPNEVKIELPVDAHLPHEYVPGERLRLEAYKKLAVVEDEHGLTEIEA
ELQDRYGTPPQPVRNLFEVARLRIIARQGGVGDISSQGRYIRFGPLELRESQSLRLQRLF
PGTLVKPTHALVPTPKTAPVGGQPLRDLEVLRWATALVKAVLLDDIAAAAGAAGA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcctcgacccgttgctcgatctgctgtccggtgaccccgccgtacgccgtgtcctg
gacctccgcagctccgcggacgtcgtcgacgtcgctgcctcgcccggcgcccgggcgccg
ctgctgtccctgctgacgcgccccggcgacggggcgcgggtgccgatcctggccgtgacc
gccaccggacgcgaggccggcgacctgtccgaggcgctgcgcagcctgctccccgagcac
gccgtcgcggagttccccagctgggagacgttgcctcacgagcggctgagcccgcgcagc
gacaccgtcggccgtcgactcgccctgctgcggcgcctcgcgcaccccgaccacgccgag
catgcggagcacggcccgatcgacgtcgtcgtggcgagcgtgcgcgccgtcctgcagccc
atcgcccacggtctcggcgacctgcagccggtcgagctgcggcccggcaccgacgcgcga
ctcgaggacgtcgtcgaggctctcgccgacgcggcgtacgcccgggtcgacatggtcgaa
cgccggggcgagttcgccgttcgcggaggcatcctcgacgtcttcccgccgaccgaggag
cacccgcagcgggtggagttctggggcgacaccgtcgaggaggtgcgctggttcaaggtc
gccgaccagcgctcgctggagatcgccgagggcggactgtgggcgccgccgtgccgcgag
ctgctgctcaccaccgcggtccgcgaccgcgccagggagctcgcgccgcagctcgccggt
gtcagcgacatgctggagaaggtcgccgagggcatcgcggtcgagggcatggagtccttg
tcgccgatcctgctcggcgacgcgatgcagccgctgctcgacgtgctgctgcccggcacc
cacgtcgtgctctgcgatcccgaacgcgtgcgcacccgcgccgccgacctggtgaccacc
agcgaggagttcctcgacgcgagctgggccaacgcggccgccggcaacgtcgtaccggtc
gacctgcggggcgcgctcggcaccgcgtcgtactggagcctgtcccagctgcgcgaccac
gcgctggacaccggccggccgtggtggtcgatgtcgtcgttctcctccgacgaggagctg
gtcgagttcgccgaggacgagctgccgggggagcggatcaccctgcacacgcaggagatc
ccggcctaccgcagcaacaccgagcacgccgtcgacgacctgcgcaagtgggccgccgag
gggcagcgggtgctcgtggtcaccgagggccccggcctggccaagcgggtcaccgaggtg
ctctcggagaacgacgtcaccacccgcgcgctcggccccctcgaccccggcatggtcgag
gtcagcaccggctgtctggggcgtggcttcgccctgccgtccagcgacctggtcgtcgtg
accgaggccgacctgaccggcagccgcggcacgagcggcagcaccaaggacatgcgccgg
atgcccgcgcgccgccgcaacgtcgtcgacccgctgcagctgcgccccggtgactacgtc
gtgcacgagcagcacggtgtcggccgcttcgtggagatgatgcagcgctccgtgggcggc
gcgacccgcgaatacctggtgctggagtacgccgcgtccaagcgcgggcagcccggcgac
cggctcttcgtgccgaccgatcagctcgaccaggtcactcgctacgtcggcggcgagctg
cccacgctcaacaggatgggcggctcggactggcagaccaccaagtcgcgcgccaagcgg
cacgtgcgccagatcgccggcgagctcatccggctctactcggcgcggatggccaccgag
ggtcacgcgttcgcacccgacagcccgtggcagcacgagctggaggacgccttcgcctac
atcgagacgcccgatcagctctccagcatcgacgaggtcaaggccgacatggagaagtcg
gtgccgatggaccggctcatctgcggcgacgtcgggtacggcaagaccgagatcgcggtg
cgggcggcattcaaggccatccaggacggcaagcaggtcgccgtgctctgcccgaccacc
ctgctggtgaaacagcacgtgcagaccttcaccgagcgctacgccggcttccccgtcgtg
gtgaaggcgttgtcgcgcttccagtccgaccgcgaggcacgcgaggtgatcgaggggctc
aagggcggcggcgtcgatctggtcatcggcacccatcgactgctgtcgaaggaggtccag
tacaaggacctcggcctcgtcgtggtcgatgaggagcagcgcttcggtgtcgagcacaag
gagcagttgaagcagatgcgcaccgcggtcgacgtgctcgcgatgtccgcgacgccgatc
ccgcgcaccctggagatggcggtcaccggcatccgcgagatgtccactctcgcaacgccg
cccgaggagcgtcaccccgtcctgaccttcgtcggcggctgggacgagaagcagatcggc
gccgccgtgcgccgcgagctcatgcgcgagggtcaggtcttcttcatccacaacaaggtg
gcgacgatcgagaaggcggccacgcggctgcgcgaactcgtgcccgaggcgagggtggtg
acggcgcacggcaagatgcccgagcagcgcctcgaggacgtcgtcgtcgacttctgggaa
cgccgcgccgatgtgctggtgtgcaccacgatcgtcgagacgggcctggacatctccaac
gccaacacgctgatcgtcgagcgggccgacctgatgggcctgtcgcagctgcaccagctg
cgcggccgcgtcggtcgagggcgcgaacgcgcgtacgcctacttcctcttcccgcccgag
aagccgttgaccgagacggcgcacgaccggctgcagaccatcgccagccacaccgacctc
ggcgccggcatgcaggtcgccatgaaggacctggagatccgtggcgcgggcaacctgctc
ggcggcgagcagtccggccacatcgccggcgtgggcttcgacctgtacgtgcggatggtg
ggcgaagccgtggccgacttccgcggggagaaggacaccaccccgaacgaggtcaagatc
gagctgccggtcgacgcgcacctgccgcacgagtacgtgccgggggagcggttgcggctc
gaggcgtacaagaagctggcggtcgtggaggacgagcacggcctcaccgagatcgaggcg
gagctgcaggaccgctacggcacaccgccgcagccggtccgcaacctgttcgaggtggcg
cggctgcggatcatcgcccggcagggcggggtgggggacatcagctcccagggccgctac
atccggttcggcccactggagctgcgtgagagccagtcgctgcgcctgcagcggctcttc
cccggcacgctggtgaagccgacgcacgccctggtgccgacgccgaagacggcaccggtc
ggcggccagccgctgcgcgacctggaggtgctgcgctgggcgacggccctggtgaaggcg
gtgctgctggacgacatcgcggcggccgccggagccgcgggcgcgtga
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