Allobranchiibius sp. GilTou73: LVQ62_01030
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Entry
LVQ62_01030 CDS
T07800
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
alx
Allobranchiibius sp. GilTou73
Pathway
alx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LVQ62_01030 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alx03400
]
LVQ62_01030 (ligD)
Enzymes [BR:
alx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LVQ62_01030 (ligD)
DNA repair and recombination proteins [BR:
alx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LVQ62_01030 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UIJ35028
LinkDB
All DBs
Position
206585..207544
Genome browser
AA seq
319 aa
AA seq
DB search
MRPMLATPSARVPSGDRWQHEVKWDGMRVLADVHDGRVRLTSRTEREVSVAFPELLTVTA
GLSAYDDLLLDGEIVSLREGRPSFGALAERFNVGDARTAATLAVQAPVTLMAFDVLRMAG
TSTLARPLSQRRELLEGIGIATPRVQVPPVFTEGDDLLRATADQGLEGIVSKRTDSAYLP
GSRSPQWRKIVHRTTGSYVIGGWRPETDSARLGALLVGTPTPDGLVFRGRIGSGLAGAAG
DRLLAQLRSRSRPDSPFLERVPAIDAKGCTWVEPDLVADLEYHGVSEGGRLRQPTWRGLR
PDLSPAELMDTAVQDAADG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctcgccaccccttccgcacgggtgccgagcggcgaccggtggcagcac
gaggtcaaatgggacggcatgcgggtgctggccgacgtgcacgacggccgggtgcggctc
acctcccgcaccgaacgcgaggtgtcggtggcctttcccgagctgctgaccgtcaccgct
ggcctgagtgcgtacgacgatctgctcctcgacggggagatcgtgagcctgcgcgagggc
cgaccgtcgttcggtgcgttggccgagcggttcaacgtcggcgacgcccgcaccgctgcg
accctcgcggtgcaggcgcccgtgacgctgatggccttcgacgtgctgcggatggccggc
acgtcgacactggcgcggccactgtcgcagcgccgggagttgctggagggcatcggcatc
gccaccccgcgggtgcaggtgccgccggtgttcaccgagggcgacgacctgttgcgggcg
accgccgaccagggcctggaggggatcgtgtccaagcgcaccgactcggcgtatctgccg
ggatcgcgcagcccgcagtggcgcaagatcgtgcaccgcaccacgggctcgtacgtgatc
ggcggctggcgaccggagaccgattccgcgcgactaggggctctcctcgtggggacgccg
accccggacggactggtcttccggggtcgcatcggttcggggctggccggcgccgcgggt
gaccggctgctggcacagctgcgctctcgcagccgaccggactccccgttcctggaacgg
gtgccggcgatcgatgcgaagggctgcacatgggtcgagccggacctggtggccgacctg
gagtaccacggggtctccgaggggggccggctgcggcaaccgacgtggcgaggactgcgc
ccggacctcagtcctgccgagctcatggacacggccgtacaggatgccgccgatggctga
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