Arabidopsis lyrata (lyrate rockcress): 9302608
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Entry
9302608 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9302608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9302608
03009 Ribosome biogenesis [BR:
aly03009
]
9302608
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9302608
Spliceosome [BR:
aly03041
]
Complex A
U1 snRNP components
U1 related factors
9302608
Complex B
9302608
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Helicases
9302608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
9302608
NCBI-ProteinID:
XP_020871063
LinkDB
All DBs
Position
Unknown
AA seq
588 aa
AA seq
DB search
MSSYDRRFADPNSYRQRSGAPVGSSQPMDPSAAPYNPRYSGGGGGYGPSPVMAGDNSGYN
RYPSFQPPTGGFSVGRGGGRGGYGQYGDRSGGGNWGGRGGSSKRELDSVSLPKQNFGNLV
HFEKNFYVESPSVQAMTEQDVAMYRTERDISVEGRDVPKPVKLFQDANFPDNILEAIAKL
GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLI
LAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML
ECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVESLARQ
FLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGC
DQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVV
NYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELIKILQEAGQVVPPTLSAL
VRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSRSTSNFVPHGGKRTW
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtatgatcgtagatttgctgatccaaattcgtatcgccaacgctctggcgcc
ccagttggttcgtctcagccgatggatccttccgctgcaccatacaacccacggtacagt
ggtggtggaggtggatatggaccgtctcctgtaatggccggtgacaattccggctataat
cggtacccatctttccagccacctactggtggtttctctgttggtcgcggcggtggaaga
ggtggatacggtcaatacggggatagaagcggcggagggaattggggaggacgtggtgga
tcgagtaaaagagagttagatagtgtttctcttccgaagcagaattttgggaatcttgta
catttcgagaagaatttctacgtggagagtccctctgtgcaggctatgacagagcaggat
gttgctatgtacagaaccgagagggatatatccgttgaaggtcgtgatgttcctaagccg
gttaagttgttccaagatgctaattttccagataatattctcgaagcaattgctaaattg
ggatttactgagccaacacctatacaagctcaaggatggccgatggcgttgaagggtagg
gatttgattggtattgctgagactggctctggtaagacattggcttacttgttaccagcg
ttggttcacgttagtgcgcaacctcgattaggacaggatgatggccccattgtgttaatt
ctagcgcccacgagagaactagctgttcagattcaagaggaatcaaggaaattcgggctt
cgatctggtgttagaagtacttgtatctatggtggtgctcctaaaggacctcagattcgc
gatcttagaagaggtgttgagattgtaattgctacacctggtcgtttgatcgatatgttg
gagtgtcaacacactaatttgaagagagtgacttaccttgtactggatgaggctgacaga
atgttagacatgggatttgaaccccaaattagaaagattgtatctcagatccgacctgat
agacaaacacttctttggagtgcaacatggccacgagaggttgaatctcttgccaggcag
tttctacgagatccatataaggccattattggatcaacagatctaaaagctaaccagtct
attaaccaagtaatcgagattgtaccgacgccagagaaatacaacaggctccttacactg
cttaagcagttaatggatgggagtaaaatcctaatatttgtggagacaaagagagggtgt
gatcaagtgactagacaattgagaatggacggatggccagctcttgccatacatggtgac
aagacccaaccggaaagggaccgagtattggcagaatttaagagtggacgaagcccgata
atgactgccactgatgtagcagcaaggggacttgatgtgaaggacattaaatgtgtggtt
aattatgatttcccaaataccttggaggattacatccataggattggtcgaaccgggcgt
gcaggagctaaaggaatggcctttacatttttcacacatgacaatgctaagtttgcaaga
gagcttatcaagatccttcaagaagctggtcaagttgtacctcctactctctccgcacta
gtccggtcatctggttcgggttatggaggttctggtgggggaagaaacttccggccaaga
ggaggaggacgtggtggtgggtttggagataaacggtcaagatcgacttcaaactttgta
cctcacggtggaaagaggacttggtag
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