Arabidopsis lyrata (lyrate rockcress): 9304163
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Entry
9304163 CDS
T01578
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
aly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9304163
09124 Replication and repair
03420 Nucleotide excision repair
9304163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9304163
03400 DNA repair and recombination proteins [BR:
aly03400
]
9304163
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
9304163
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
9304163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
9304163
NCBI-ProteinID:
XP_020873999
LinkDB
All DBs
Position
Unknown
AA seq
452 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYINVPVPA
AMMEEWVLADGASKHRVAIDRLIQLRIFSETSDRKRGISYSLNPTFQNNLQKHIISGGVL
PREPMHSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMRIFQRGLLS
QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYISNAEERDVEPADLISFLLELSFHVTGE
AYNSNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV
METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL
QQNSHPRCADRVPSIPENVTDQIRLWETDLKRIEMTQAHFYDEFPSKDVFEAACDFAREW
GGLLWEDSKRMRLVVKSEVHNQMREFLHNQTK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagttaagatcattgctaaaaatttcatggacatggtggcgtcacttccagct
atcaagcttgacaaactctacaacaatgtctttatctgcgaagccattctcaggtctttg
ccgcctcttgccaagaagtatgtattgcagatgttgtacattaatgttcctgtacctgct
gcgatgatggaggagtgggttcttgcagatggtgcctccaagcatagagttgctattgat
cgactgattcaattaaggattttttcagaaactagtgataggaaaaggggaatcagctac
agcctaaatcctacatttcagaacaatcttcagaaacatataatttccggtggagttttg
cctagagagcctatgcattccgacaatgccattaaacttccaagcctacaagaactcgaa
acctatgcacttaagcaatgggagtgtttcttgctacaacttataaattcgggtcaaggt
gagaagctaactggcatcagttcatccatgatgagaattttccagcgaggtttattgagt
cagagagacaaagatggcccgagattaactgagagtggctttcagtttttgctgatggat
acaaatgcccagctttggtacattattcgagaatacatatcgaatgctgaggagcgagat
gtagaaccagcagacttgatttcgtttttgttggagcttagttttcatgttactggtgag
gcatataactcaaatactttgacagaggttcaaaataataccctcaaggaccttgcagac
ttgggattagttaagcttcaacagggaaggaaagacagttggtttattcctactaaactg
gctacaaatttatcagtcagtctggcagattcatcagcgcgaaaagagggatttgtcgtg
atggaaacaaacttcaggatgtatgcatactccacatctaagttacagtgtgaaatttta
cgactgtttgcgaggatagagtaccaacttccaaaccttattgcttgtgccattacaaag
gaaagtttgtacaatgcatttgacaatggcatcacatcagatcagattataactttcctc
cagcagaattctcatccacgatgtgctgatcgggtcccatctattccagaaaatgtcact
gatcagattcggctttgggagacagatctgaagagaattgagatgacccaggctcacttc
tatgatgaatttccttcaaaagatgtgtttgaggcagcgtgtgactttgctcgggaatgg
ggaggccttctttgggaagactctaagagaatgcgacttgttgtgaaatccgaagttcac
aatcagatgcgtgagtttcttcataaccaaaccaagtga
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integrated database retrieval system
