Arabidopsis lyrata (lyrate rockcress): 9307293
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Entry
9307293 CDS
T01578
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 12 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
9307293
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
aly01002
]
9307293
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9307293
Enzymes [BR:
aly01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
9307293
Peptidases and inhibitors [BR:
aly01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
9307293
Ubiquitin system [BR:
aly04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
9307293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USP7_ICP0_bdg
USP7_C2
UCH
MATH
UCH_1
RA
ubiquitin
SASP
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
9307293
NCBI-ProteinID:
XP_020878857
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEVIQPETAASTVENQPAEDPPTLKFTWT
IPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYAQF
SLAVVNQIHSRYTIRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVA
VRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPTA
SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT
VVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE
GDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLD
RENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED
LKRALEEQYGGEEELPQTNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAE
HLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFRI
QKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQQVGQIREASN
KANTAELKLFLEVEHLDLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSSKPM
DITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVN
KEIECRYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKLHTYDDVVEKVAEKLGLD
DPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLK
TLKVAFHHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIYKI
FPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQQVQNFGEPFFL
VIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRRDVYGA
FEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgactatgatgactccgcctcccgttgatcagccagaagatgaggagatgcttgtgccg
aattcagatttggtcgacggtcctgctcagcccatggaagttatccaacccgagactgct
gcgagtactgtggagaaccagccagctgaggatcctcctactctgaaattcacgtggact
atccctaatttctctaggcaaaataccaggaagcattactccgatgtatttgtcgttgga
ggttacaaatggcgcatattaattttcccgaaagggaacaatgttgatcatttgtccatg
tacttggatgtttctgatgctgcgagtttgccgtacggttggagcagatatgctcagttc
agtctggctgtagtcaatcaaatccactccagatataccattagaaaggagacgcaacat
caattcaatgctagagaaagcgattggggatttacatcattcatgcctcttagcgaactt
tatgatcctagtagaggatatttagtgaatgatactgttttggttgaagctgaagtcgct
gtacgtaaggttcttgattactggtcatatgactctaaaaaagagactggttttgttgga
ctcaagaaccaaggtgcaacttgttacatgaattctctcctacagacactataccacata
ccttacttcagaaaggctgtataccacatgccgacaactgagaacgatttacccacagca
agtatacctttggctctccaaagtttgttttacaagctccaatataatgacactagtgtt
gcaacaaaggagctgacaaagtcttttggttgggatacatatgattcctttatgcaacat
gatgtgcaagaactcaatcgggttctctgtgaaaagcttgaggacaaaatgaagggaact
gttgtggagggaacaatacaacaactatttgagggccaccatatgaattatattgagtgc
ataaatgtagatttcaaatcgacacggaaagaatcattttacgaccttcagctggatgtg
aaaggctgcaaggatgtttatgcttcttttgacaagtatgttgaagttgaacgtcttgaa
ggagataacaaatatcatgcagaaggacatggtttgcaggatgcaaaaaaaggtgttctt
ttcattgactttccaccggttcttcaactccagctcaagaggtttgaatatgactttatg
agggacaccatggtaaagataaacgatcggtatgagtttcctcttgaactggatcttgat
agagaaaatggaaagtatctgtctcctgatgctgacaggagtgtccgcaacctttatact
cttcacagtgtcttagttcatagtggaggagtacatggtgggcactattacgcttttata
aggcctacgctctcagatcagtggtataaatttgatgatgagcgtgtaacaaaggaagat
ttgaaaagggcattggaggagcaatatggtggtgaagaagagctaccacagactaatcct
ggtttcaataaccctcctttcaaattcacaaagtactcgaatgcttacatgcttgtatat
atccgggaaagtgacaaggataaaataatctgcaacgttgatgagaaagacatagcagaa
catttaagggtgaggctaaagaaagagcaagaagaaaaggaagataaaagaagatacaag
gcacaagctcacctatatacaataattaaggttgcaagagatgaagatcttaaggaacaa
atcgggaaggatatatattttgatcttgtggaccatgacaaagttcgcagtttccgtatc
cagaaacagacaccatttcaacagtttaaggaggaggtagccaaagaatttggtgtacct
gttcagttacagaggttctggatttgggctaagcgacaaaaccatacctatcgtcccaat
cgcccccttacgcctcaagaggaattacaacaggttggacaaataagagaagcatctaac
aaggcaaacactgcagaactaaagcttttcctggaagtagagcacctggatttacgtcct
attcctcctcctgaaaaatcaaaagaagatattctgcttttctttaagctttatgacccc
gagaaggcagtattaagctatgcaggcaggctgatggtgaaaagttccagtaagcctatg
gatataactggaaaactgaatgaaatggttggctttgctcctgatgaagaaatagaactt
tttgaggaaatcaagtttgaaccttgtgttatgtgcgaacacttggataagaaaacttca
ttcagattgtgtcaaattgaagatggagatatcatttgctttcagaaacctctagttaac
aaggagattgagtgccgctacccagctgtgccttcgtttcttgaatatgtccagaataga
cagctggtccggtttcgtgctctggaaaaacctaaagaagatgagtttgttctggagttg
tcgaagctgcacacttatgacgatgttgtggaaaaagtggctgagaagcttggtcttgac
gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag
cctatcaaataccgtggagtagaccatttgtcagatatgttagttcactacaatcagacg
tctgacattttgtattatgaagttctggacattcctcttccagaattgcaaggtcttaaa
accttaaaagttgctttccatcatgccacgaaggaagaagtggtaatccacaatatcaga
ctacctaaacaaagcacggtcggagatgttattaatgaacttaaaacaaaggtggagctt
tcgcatccagatgcagaactgagattgctcgaggtgttttaccacaagatctacaagatt
ttcccatcaactgaaagaattgagaatataaatgaccagtactggactttacgagctgag
gagattccggaagaagagaagaatatcggtccaaatgatcgcttaattcttgtgtaccat
tttgctaaggagactggacaaaatcagcaagtgcaaaactttggcgagcccttcttcttg
gtaatccatgaaggtgaaactcttgaagaaataaagaaccgtatccaaaagaagcttcat
gtatccgatgaggactttgccaagtggaagtttgcgtttatgtcaatggggcgtccagag
tacttgcaggacacagatgttgtttataatcgctttcagagaagagatgtctatggtgct
tttgagcagtacctcgggttggagcatgctgacactactcctaagagggcttatgctgca
aaccagaaccgccacgcttacgagaagccggtgaaaatatacaattag
DBGET
integrated database retrieval system
