Arabidopsis lyrata (lyrate rockcress): 9316217
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Entry
9316217 CDS
T01578
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9316217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9316217
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
9316217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
9316217
NCBI-ProteinID:
XP_020883852
LinkDB
All DBs
Position
Unknown
AA seq
737 aa
AA seq
DB search
MSGFPFGQSNSVGSFSFGSSSATNSSSASSTTSPLSFSFNQSSNPSSTGFGFGSTVSSTP
ASSTTPSFGFGASSSPSFGFGSSASSTPSFGFGSSASTTPASTTPSFGFGTAASSSASAP
SLFGSSTTNASSAAPGSSPFGFVTSSASSATVSASSPFGVPASSSATPSSSIFGAAPASG
SSSLFGSSSSLFSAPSSASASNSSIFGASSSAATSTSPLFGAPASATGSTPSFGVASAPG
SSSSIFGATGSLPSFSVASSASGSSPPIFGATGSSPSIFGSSSSAGSTPSLFASSSSGAT
ASSPSPFGVSTINSSTTTNPSNASASPFSASTGFSFLKSTASSTTSTTTASAPPQTASSS
SFSFGTSANSGFNLSTGSSAAPASSTSGAVFSIATTTTTSSSTPAATSAPASSAAASTMA
FPSFGVSSSATNTTPASSAATFSTTGFGLASSTPATGSTKSFTGFAVPQTSTPASSSQPQ
TTTPAFSFSLPSSTSTTAPATTSATTTQTSLVVPSSSGTSTAVAPVAGSPKLPSEITGKT
VEEIIKEWNTELQERTGRFRKQANAIAEWDKRILQNRDVLLRLEIEVAKVVETQSSLERQ
LELIETHQQEVDKALQSMEEEAERIYNDERKSLLDDEAASTRDAMYEQSELVERELEHMT
EQIRSIIQSVNANQGGELEAIDGMSPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKIAS
QGSSGDRELMAPKHWMS
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtttccatttggtcaatccaattccgttggaagtttctcattcggatcttct
tctgcaactaattcctcttctgcttcatctaccacttctccgttatctttctcctttaac
caatcttcaaaccctagctccaccggattcggtttcggatccaccgtctcatcaactcct
gcttcctccactactccatcttttggattcggagcttcctcatctccttcgttcggattc
ggttcctctgcttcatcgactccatcgttcggattcggatcctctgcctccacgactcct
gcttccacaactccatcgtttggatttggcaccgccgcttcttcttctgcttctgctccg
tcactgtttggttcatctaccaccaatgcttcttcggctgctcctggttcttctcctttt
ggattcgtaacttcttcggcctcttcagcgactgtttcagcttcatctccgtttggagtt
cccgcttcttcctccgcaactccatcttcatctattttcggagcggctccagcgagtggt
tcatcatctctctttggatcttcctcatccttattctccgctccttcatctgcctccgcc
tcgaattcttctatcttcggagcatcctcatccgccgctacttcaacatcccctcttttc
ggtgcgccagcatcagccaccggctcgacaccgtcctttggcgtggcctcagcacctggc
tcgtcatcatccatctttggagccaccggctcgttaccttccttcagtgttgcctcatca
gcctctggctcctcaccgccaatctttggagccaccggttcgtcaccgtcaatcttcggt
tcgtcttcgtcagccggttcaactccatctctctttgcatcgtcctcgtcaggcgcaaca
gcttcttcaccttccccgtttggagtatccaccatcaattcctcaactacaaccaatccc
tcgaatgcctcagcttctcctttctccgcttctaccggattctctttcttgaaaagcaca
gcaagttcgaccaccagcaccaccactgcttctgctcctccacaaacggcttcatcttct
tccttctcatttggtacatccgccaattcaggttttaacctttcaaccggaagctccgca
gcacctgcctccagcacatccggagcagtgttttctattgcaaccaccactaccacttct
tcttcgactccggctgccactagtgcaccagcttcttcagctgcagcttctacaatggct
ttcccttcttttggtgtgagttcatccgcaaccaacaccactccggctagctccgctgct
acattcagtactacaggatttggtttggctagctcgacacctgccactggatctacgaaa
tcttttactgggtttgctgtaccgcagacatcaacacctgcatcatcttcacaaccacaa
actactactcctgctttctcattcagtcttccatcttcgacttctactactgctcctgct
actacttctgctactacaacacagacatctcttgttgtgccttcgagtagtgggacgagc
acagctgttgctccagtggctggttctccaaagttgccatctgaaataactggcaaaact
gttgaggagattatcaaggagtggaatactgagctacaagagcgcacagggagattccgg
aaacaggcaaatgcaatagcagagtgggataagcggatcttgcagaaccgtgatgttctt
ttgaggcttgagattgaagttgcaaaagtggttgaaacccaatctagcttggaacgacag
ctggaattaatcgagactcatcagcaagaggttgacaaggctttgcaaagcatggaggaa
gaggctgagcgtatatataatgacgagcggaaatcacttcttgacgatgaagcagcatca
actagagatgcaatgtatgaacagtctgagctagtagaaagagaattggagcatatgact
gaacaaatcagatcgattatacaatccgtaaatgcaaaccagggtggggaacttgaagca
atagatgggatgagtccactggacgttgttgtcagaatcttgaacaatcaacttagttcc
ttaatgtggattgatgagaaagcagaggaattctcttctcggattcaaaaaattgcatcg
caaggttctagtggagatcgtgaattgatggctccaaagcactggatgtcttga
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integrated database retrieval system
