Arabidopsis lyrata (lyrate rockcress): 9317513
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Entry
9317513 CDS
T01578
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9317513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9317513
03019 Messenger RNA biogenesis [BR:
aly03019
]
9317513
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9317513
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
9317513
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
9317513
NCBI-ProteinID:
XP_020883988
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MENSRRPFDRSRDPGPMKKPRLSEESIRPVNSNARQFLSQRTLGTATAVTVPPASSRFRV
GGREIESSIASDPSREAYQPQPVHPHYELVNQYKSALAELTFNSKPIITNLTIIAGENVH
AAKAVVATICNNILEVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDP
PMHSNMRHLFGTWKGVFHPQTLQLIEKELGFNAKSDGSAAVISTARAEPQSQRPPHSIHV
NPKYLERQRLQQSGRTKGMVTDTPEIAPNLTRDSDRLERVSSIASGGSWVGPAKVNTIRR
PQRDLLSEPLYEKDIESIAGEYDYASDLPHNSRSVIKKVGSAMITDDGCEKQWYGAMSRS
PDLISDQRDGLHTKSRTSNYAMARLANLESSGPSRNIGAPCDSWKNSEEEEFMWDMHSRL
SETDVATINPKNELHAPDESERLETENHHLKRPRFSALDPRFDPANSSEQQDPSIFGHWT
SSPRSLHDSEVFSSTNATSTAARKGIQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQNV
TKQDVRRAHSLPQRDPRASRFPAKNVPRDDSVRIPSSSSQFKNTNMRELPDASQVEIFDS
KLAAENAPGLTIASEATGQPNMSDLLEAVMKSGILSNNSTHGAIKEEISQDEVNPGALTL
SAASKPKNLPSALPISVAGDNLLARLKVEQSSAPLVSCAASLTGITSVQTSNENSKASDP
LSCLLSSLVSKGLISASKTEQPSAPSITQEHSPDHSTNSSMSVSVVPSDAQPSVLVKKGP
STAPKVKGLTASETSKSEPEDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCGVRLKQ
KEELDRHMELHDKSKGELSGKNSKCRVWFPKVENWIAAKAGELEPEDEEVLSEPESAIED
GPAVAADETQCACVLCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEASGPIVHTGCLTT
SSLQSLEVGNAIKEEIVE
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagaccgtttgatagatccagagatccaggtccgatgaagaaacct
aggctcagcgaggaatcaatccggcctgtgaattccaacgcgcggcagtttttgtcgcag
agaacgcttggtacggctacggcggtgacagtaccaccggcgtcgtcaagatttcgagtt
ggtggcagagaaattgagagtagtattgcaagtgatccgagccgagaggcttaccagcca
cagccggttcatccacattacgagcttgtgaatcagtacaagtctgcactggctgagctc
actttcaactcgaagccaataataacgaaccttacaataattgctggagagaatgttcat
gctgctaaagccgtcgtagccaccatttgcaacaacatcctcgaggtaccaagtgatcag
aagctgccaacactgtacctgttagacagcattgtgaagaacatcggaagggattacatc
aagtactttggtgccaggctgcctgaggtttttgttaaggcttacaggcaagttgaccct
cctatgcattctaacatgcggcatctttttggaacctggaaaggcgtctttcatccgcaa
acacttcagcttattgagaaagaacttggctttaatgctaaaagtgatggttcagcagct
gttatatccacagccagagctgagccgcaatctcagcgcccaccacatagcatccatgtg
aatcccaagtatctagaaaggcagcgccttcagcagtcgggacggacaaaaggaatggtt
actgatacaccagaaatcgcacccaatttgactagggattcagatagactggagagagtt
tcaagcatagcatctggaggctcgtgggtaggtccagctaaagtaaataccattcggcga
cctcaaagagatttacttagtgaacccctctacgagaaagatatcgagtcaatagcaggg
gaatatgattatgcttctgatctaccccataactcaagatcagtgattaagaaagttggt
tcagcgatgattactgatgacggatgtgagaaacaatggtatggagctatgagcaggagt
cctgatctgatttctgaccaaagggatgggttacataccaaaagcagaacttccaactat
gctatggcgagactagcaaatttggaatcaagtggtcccagtagaaatataggtgcgcct
tgtgatagttggaaaaactctgaggaagaagagtttatgtgggatatgcactcaaggtta
tccgaaactgatgtagccactatcaacccaaagaacgagcttcatgcaccagatgaatca
gagagactggaaactgaaaatcaccacttaaaacgaccaaggttttcagctctcgaccca
aggtttgacccagcgaattccagcgagcaacaagatccaagtatttttggtcattggacg
tcttctccaagatctttgcatgattcagaagttttttcttctactaatgcaacctctact
gcagctagaaagggaattcagcctcaacctagggttgccagctctggaattttgccaagc
tcaggatctgggtcagatagacagtcgcctttacatgattcaacttctaaacagaatgtg
accaagcaagatgttagaagagctcactccctccctcaacgtgatcctagggcttcccgg
tttccagcaaaaaatgttcccagggatgactctgtacggatcccatcttcaagtagtcag
tttaaaaacacaaatatgcgtgaactacctgatgcatctcaagtggaaatctttgactct
aagttggcagctgaaaatgctccaggcctaactattgcctcagaagctacaggacaaccc
aacatgagtgatttgctggaagctgtcatgaagagtggaatcctttctaataattcaaca
catggtgcgatcaaggaggaaatttctcaggatgaggttaacccaggggcactaacccta
tcagcggcctctaagcctaagaatttgccatcagcattgccaatttcagtggctggtgac
aatttattagctcgtttaaaagttgaacaatcctccgcaccacttgtctcatgtgcagcg
tctcttactggcatcacatcagtacaaacgtcaaatgagaatagtaaggcctcagatcct
ctttcatgcctcttgagctccttagtttcaaagggcttgatatctgcttcaaagacagag
cagccatcggctccttccataacgcaggaacatagtcctgatcattccaccaatagctct
atgtctgtatctgtggttccatcagatgctcaaccatctgttctggtgaagaaggggcca
tccactgcccctaaggtaaaagggttaactgcatctgagacatcaaaatctgaacctgag
gacctcataggattgaagtttagggcagacaaaatccgtgaacttcacccctctgtcatt
agtagtctctttgatgatcttccacatctctgcacctcctgcggcgttcgccttaaacaa
aaggaagaacttgataggcacatggagttgcatgataagagtaagggcgagttaagtggc
aaaaacagtaaatgtagggtttggtttccaaaggttgaaaactggattgcagcaaaagct
ggagagttagaacctgaagatgaggaagttctgagtgaacctgagagtgctattgaggat
ggtccagccgtagctgctgatgagacccaatgcgcatgtgtattatgtggagaagttttt
gaggattatttcagtcaagaaatggctcaatggatgttcaagggagcttcttacctgacc
aatcctccagccaacagtgaggccagtggtcctatcgtccatacaggttgtctgaccacg
agttcattacagagcttggaagttggaaatgcaatcaaggaggaaattgttgagtag
DBGET
integrated database retrieval system
