Arabidopsis lyrata (lyrate rockcress): 9317548
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Entry
9317548 CDS
T01578
Name
(RefSeq) ABC transporter B family member 1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
9317548
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
aly02000
]
9317548
04147 Exosome [BR:
aly04147
]
9317548
04090 CD molecules [BR:
aly04090
]
9317548
Enzymes [BR:
aly01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
9317548
Transporters [BR:
aly02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
9317548
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
9317548
CD molecules [BR:
aly04090
]
Proteins
9317548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
Zeta_toxin
ABC_ATPase
AAA_22
RsgA_GTPase
AAA_29
AAA_15
AAA_5
AAA_21
AAA
nSTAND1
SbcC_Walker_B
APS_kinase
DUF87
Rad17
ECH_2
Motif
Other DBs
NCBI-GeneID:
9317548
NCBI-ProteinID:
XP_002879630
UniProt:
D7LJ93
LinkDB
All DBs
Position
Unknown
AA seq
1337 aa
AA seq
DB search
MSQESDQKKEEEEEIKSLEQWRWSEMQGLELLPDNNNNSRNPETELRRNSPEMENDGGAP
PPPPTLVEEPKKAEIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLV
NSFGSNANNVDKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEA
ALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQ
LALVTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRA
SQAYSSALKIAQKLGYKTGLAKGMGLGATYIVVFCCYALLLWYGGYLVRHHLTNGGLAIA
TMFAVMIGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVE
LKNVDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLL
DGQDLKTLKLRWLRQHIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFI
IKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL
DRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEA
AHETAMSNARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSY
PNYRNEKLAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSIYY
NPDHEYMIKQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEM
AWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVL
VAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYT
ANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVL
MVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHI
DFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKD
IRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALP
EGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQAC
SGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQRFTHTQ
VIGMTSGSSSRVKEDDA
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaatctgatcagaaaaaagaagaagaagaagaaataaagtcacttgaacaa
tggcgttggtccgaaatgcaaggccttgagcttctccctgacaacaacaacaactcacga
aacccagaaacagagctccggagaaactcaccggaaatggaaaatgacggtggtgctcct
cctccgccgccgacactagtggaggagcctaagaaagcagagattcgtggagttgctttt
aaagagcttttcagattcgccgacggattagattatgtattgatgggaattggctctgtt
ggtgcttttgtccacggttgctctttacctctgtttcttcgattcttcgccgatcttgtt
aattcatttggttctaatgctaacaacgttgacaagatgatggaagaagttctaaagtat
gcgctttactttttagtggttggtgctgcaatctgggcttcttcttgggcagagatttcg
tgttggatgtggagtggagagagacaaacaacgaagatgaggataaagtatttagaagct
gctttaaatcaagacattcagttctttgatacagaagttcgaacttcagatgttgtcttc
gccattaacaccgacgctgttatggttcaagacgccattagtgagaagcttggtaatttc
atccattacatggcgacttttgtttctggattcatcgtgggtttcacggcggtgtggcaa
ctagcgttagtgactcttgcggtggttccgttgatagctgtgatcggaggaattcacacc
actactctctcaaagctatctaataagagtcaagagtctctttcacaagctggtaatatc
gtcgaacagacagtggtgcaaatcagggtagtgatggcgtttgttggagaatcaagagct
tcacaagcttattcatcagctttaaagattgctcaaaaacttggttacaagacaggtcta
gctaaaggaatgggacttggtgctacttatatcgttgtcttctgttgttacgctctcttg
ctttggtacggaggttacctcgttcgccaccatttgactaacggtggtcttgccattgcc
acaatgttcgccgtcatgattggtggattggcattgggacaatcagcaccgagcatggct
gcatttgccaaagcaaaggttgctgctgcaaagatctttagaattattgatcacaaaccg
acgatagagcgtaatagtgagtccggtgtggagttagactcagtcacgggtcttgtcgag
cttaaaaacgtggacttttcgtatccgtcaaggccagatgttaagattcttaacaacttc
tgcctctctgttcctgctgggaagaccattgctttggttgggagcagcggttcagggaaa
agcacagtcgtttcacttatagagcggttttacgatccgaactcaggacaagttttacta
gatgggcaagacctgaagaccctgaaattgagatggttaaggcaacatatagggctagtg
agtcaagaacctgcattatttgccacttctatcaaagagaatatactcttaggccgtccc
gacgcagatcaagttgagatagaggaggctgctcgagtcgcaaatgctcattcctttatc
atcaaactacctgatggcttcgacacacaggttggggagagaggattgcagctatcaggt
gggcagaagcaaagaattgcgatagcaagagcaatgttaaagaacccggcgatacttctt
ttagatgaggcgacgagtgcgttggattctgaatcagagaagcttgtacaagaggctttg
gatcgtttcatgattggaaggactactctcatcattgctcatcgcctttctaccattcga
aaagctgaccttgttgctgtgcttcagcaaggaagtgtctcggagattggaacgcatgac
gagctcttttccaagggagaaaacggagtctatgctaagctaattaaaatgcaagaagca
gctcacgaaaccgccatgagcaatgcaagaaagagtagcgcaagaccgtcaagtgctaga
aactcggttagctcgccaataatgactcggaattcgtcatatggaagatcaccttattca
cggagactctcggatttttcaacttctgattttagcctctccattgacgcttcttcctac
ccaaactatagaaacgagaagctggccttcaaggatcaagccaattcattctggcgacta
gctaaaatgaactctccagagtggaaatacgctttgctcggttcggtaggctctgtcatc
tgtggctccctcagcgcgttctttgcgtatgtcctcagcgcagtcttaagcatctactac
aacccggaccatgaatacatgatcaaacagattgataagtattgttatctcttaatcggt
ctctcttccgcagcacttgtcttcaacacactccagcattctttctgggacattgtgggt
gagaatctaaccaagagagtccgtgagaagatgctcagcgctgtactcaagaatgagatg
gcttggtttgatcaagaggagaatgaaagtgcaagaattgcagcacgattagctcttgat
gccaataatgtgagatcggccataggagatagaatctcggttattgtgcagaacacagca
ctgatgctagttgcttgcactgctgggtttgttctacaatggagactcgcacttgtcctt
gtcgcagtcttccccgtagttgttgctgcaactgtcttacagaaaatgttcatgactgga
ttctcgggagacctggaagcggcgcacgccaagggaacgcagctcgctggtgaagccata
gctaatgtcaggacagtcgcagccttcaattcggaggcaaagattgttcgtctctacact
gcaaacctcgaaccaccattgaaacgatgcttctggaaaggacagatcgctggaagtggt
tatggtgtagctcagttctgtctttacgcatcttacgctcttggactatggtacgcatca
tggcttgtgaaacatggcatctctgacttctccaaaaccataagagtcttcatggtactg
atggtctcagccaatggtgcagcagagacgctcacactggctcctgatttcattaaaggt
ggtcaagctatgcgctctgttttcgaacttcttgaccggaaaactgagattgaacccgat
gatcctgataccaccccagtcccagaccggttacgcggcgaagttgaactcaaacacatt
gatttctcttacccttcaagaccagacattcagattttccgtgaccttagccttcgtgct
agagctggcaagactctagctcttgtgggtccaagcgggtgtggaaaaagctcggttatc
tccctcatccagaggttctacgaaccgtcctcaggtcgagtcatgatcgacgggaaagac
ataaggaaatacaacctgaaagccataagaaaacacatagccatagtccctcaagagccg
tgcttgttcggaaccaccatttacgaaaacatcgcttatggacacgaatgtgcgaccgaa
gcagagatcattcaggccgcgactctagccagcgcccacaaattcatatccgcgctacca
gaaggttacaagacgtatgttggcgagagaggcgttcagctctcaggaggacagaaacag
aggatcgcaattgcacgtgccctcgtgagaaaagcagagatcatgctgctcgatgaggct
actagcgctcttgatgcagagtccgagagatcagtccaagaagcattggaccaggcttgc
tctggtagaacatcgatcgtcgtggctcataggctatctacaatcaggaacgcacatgtg
atcgcggtgatcgatgatggaaaagtcgcagaacaaggatcgcattcgcatcttctcaag
aaccatcctgatggaatctacgcgcggatgatacagttgcagagatttacgcatactcag
gtgattggtatgacgtcaggatcaagttctagggttaaagaagatgatgcttag
DBGET
integrated database retrieval system
