KEGG   Arabidopsis lyrata (lyrate rockcress): 9318974
Entry
9318974           CDS       T01578                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9318974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9318974
   03041 Spliceosome [BR:aly03041]
    9318974
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     9318974
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     9318974
Spliceosome [BR:aly03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    9318974
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 9318974
NCBI-ProteinID: XP_020887589
LinkDB
Position
Unknown
AA seq 409 aa
MDMMKKRKLDENGGGLITNGGGIIGPTRLTPQDARKIIERFTTDQLLDLLQEAIVRHPDV
LDSVRSTADSDISQRKLFIRGLAADTTTEGLLSLFSNYGDLEEAIVILDKVTGKSKGYGF
VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPA
DRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQTALADPVKVIDGKHLNCK
LAVDGKKGGGKPGMPQAQDGGSGHGHVHGDVMGMVRPAGPYGAAGGMSAYGGYSGGPPPH
HMNSTPSSMGVGTGGYGSAGYGGHYGGYGGPGGTGGYGGLGSGYGGPGGGSGPYRMPPSS
MPGGGYPESGHYGLSSSTGYPGQHHQAVGTSPVPRVPHGGMYPNGPPNY
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggatatgatgaagaagcgaaagctcgatgagaacggtggaggactcattaccaacggt
ggcggaatcattggtcctactcgattgacgccacaagacgcgaggaagattatcgagcga
ttcaccactgatcagctgctcgacttattgcaagaggctatcgtacgccatcccgacgtg
cttgactctgtccgttcaaccgccgactctgatatctctcagcggaagctattcatccgt
ggtctcgcggcggatactaccacggaaggtcttctttcgcttttttccaattacggagat
ctcgaagaagctattgtgatccttgacaaggtcactgggaaatccaaaggttatggtttc
gtcacttttatgcacgttgatggagctctactagctttgaaagaaccatctaagaaaatt
gatgggcgtgtcacagtaacgcagctcgcggcttctggaaatcaaggtacgggctcccag
attgcagatatatcaatgaggaagatctatgtggcgaatgttccgtttgatatgccggcg
gataggctattgaatcactttatggcttatggagatgttgaggaaggtcctttgggtttt
gataaggttacgggtaaatctagaggctttgcattgtttgtctacaagacagctgaaggt
gcgcagactgctcttgctgatccggtgaaagtgattgatggaaaacatttgaattgtaag
ttggctgttgatggtaagaaaggaggagggaagcctggaatgccgcaagctcaggatggt
ggttctggtcatggacacgttcatggtgatgtaatgggaatggtgcgtcctgcaggacct
tatggtgcagctggtggcatgagtgcttatggtgggtactcgggaggaccaccaccgcat
cacatgaattccacaccctcttcaatgggtgttggtactggtggatatggaagtgctggg
tatggtggacactatggtggatatggaggtccaggtggtactggcggctacggtggactt
ggcagtgggtatggtgggcctggtggtggaagtgggccgtatagaatgccaccaagttcg
atgcctggtggtggttatcccgagagtgggcactatggtctttcatcatctactggatat
cctggacagcatcatcaagctgttggaacctcccctgtgccaagagttccgcatggagga
atgtacccaaacggtccaccaaactactga

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