Arabidopsis lyrata (lyrate rockcress): 9328979
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Entry
9328979 CDS
T01578
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9328979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9328979
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9328979
mRNA degradation factors
5'-3' decay
Decapping complex
9328979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
TFIIA
Motif
Other DBs
NCBI-GeneID:
9328979
NCBI-ProteinID:
XP_002890176
UniProt:
D7KEH3
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MDLKQIGNHSTGVFDASQYDFFGSHVVEEVEFGGLEDEDEEELPVAGIEEDFAFDKDEVH
VSRTLSDADDLASTFSKLNRDPEGYRSTVPIAGIGSRQYYVGDGWNHGEELPNWYGQQKL
DSEAIQDDKRRPSQPFPTLNLVEQRNLHRATSYPEPQHQQRPNPHQQQFSSEPILVPDQH
LGQPNTQFHSDGSHTRSPNLSPFPSSHPQLVGMHGSPQITGNLPQFRPSLPVNNRPPAQW
MNGQNMFPGDSSGIMNNMLPQQQLPHQNGLMPQQQRMPQMQGPQNRLVHPMQPHGHLSGM
QPQLFNSNLSRSASSGSYDAMLGFGDLREARPGSSQGNRLNMRFLQHGFDGGLQRRNNAW
PPFRSKYMTAVEIENILRMQLVATHSNDPYVDDYYHQARLAKKSAGAKLKHHFCPNHLRD
LPSRARPNNEPHAFLQVDALGRVPFSSIRRPRPLLEMDPPNSTKSGNLEQKDTDKPLEQE
PMLAARVIIEEGLYLFLEVDDIDRFLEFNQLQDGGNQLRQKRQALLDGLAVSLQLVDPLG
KNGQNSGLAFQDVVFLRITSLRKGRKLLTRYLQLLFPGSDPMRIVCMAIFRHLRSLFGVR
SSDTETTKTTIKLAKVVALCIQTMDLGPVSLCLAAVSCSSEQPPLRPLGSPVGDEATIIL
KSALDRATELLRANNYNNAGMNLWRASFDEFFNLLMKHCISKYDSIMQNLNSQLPPHFAT
EMSEAAAQAIVREMPIELLRASFPHISDEQKRILVEFLKLGSQKTESVIA
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggatcttaagcagattggaaatcattctacaggtgtctttgatgcatctcagtatgac
ttttttgggagccatgttgttgaggaggtcgagtttggtggattggaagatgaagacgaa
gaagaattacctgtcgctggaatagaagaagactttgcctttgataaggacgaggttcat
gtttctagaactctgtccgacgctgatgatcttgctagtacattttcaaagttgaatagg
gatcctgaaggatataggagcacggtacctatagctggtattggatcaagacagtattat
gttggtgatgggtggaaccatggagaggagttgccaaattggtatggccagcagaaacta
gactctgaggcgattcaagatgacaaaaggaggccgtcacagccttttccaactctgaat
cttgttgagcaaagaaacctgcacagagcaacatcatatcctgaaccacagcatcaacag
cgcccaaacccgcatcagcaacaattttccagtgaaccgattcttgtaccagatcagcat
ttaggacaaccaaatacacaatttcattctgatgggtctcataccagatcgccaaatctc
tctccatttccaagttctcatcctcagttggttggcatgcatgggtcaccgcaaatcact
ggaaacttgccacagtttcgaccttctcttcctgtgaacaatcgacccccagctcaatgg
atgaatggccaaaatatgtttcctggggatagttctgggatcatgaacaacatgttacca
caacagcagttacctcatcaaaacggtctaatgcctcaacagcagcggatgcctcagatg
cagggtcctcaaaataggttagtacatccgatgcagccccacgggcatttgtcaggaatg
cagcctcaactatttaattccaacctttctcggtcagcgtcctcgggcagttatgatgca
atgcttgggtttggtgatctgagggaagcaagaccaggatcgagtcaggggaacagacta
aacatgcgctttcttcaacacggttttgatggtggacttcagaggagaaataatgcatgg
cctcctttccggtcgaaatatatgacagctgttgaaatagagaacatcctaagaatgcaa
ctggtggctacccatagcaatgatccttatgtagatgattattaccaccaagcacgtctt
gctaagaaatctgctggtgcaaaactgaagcatcatttctgtccaaatcatttgagagac
cttccatctcgtgctcgtcctaacaacgagccccacgcatttcttcaggttgatgctctt
ggtagagttcctttctcttcgatccgcaggcctcggcctctgcttgaaatggatcctcca
aattcaacaaaatctggtaatctagagcagaaagatacagacaagccccttgaacaagag
ccaatgcttgcagctagggtgattattgaggaaggtctctacctcttccttgaggtagat
gatattgaccggttcttagagttcaatcaactccaagatggtggaaaccagttgaggcaa
aagcggcaagctctgttggatgggcttgcagtgtcactacagcttgttgacccacttggt
aagaacgggcaaaacagtgggcttgcatttcaggatgttgtctttctaagaattacgtcc
cttcgaaagggccggaagctacttacaaggtacctccagcttcttttccctggcagcgat
ccaatgcgaattgtttgcatggctatttttagacacttaagatctttgtttggagtgcga
tcatcagatactgaaaccacaaaaaccacaatcaaacttgcaaaagttgtcgctttatgc
attcagaccatggatcttggacccgtaagcctgtgtctagcagcagtttcttgttcttct
gagcagccaccgcttcgtcctttgggtagtcctgtcggagacgaagctaccattatactc
aaatctgcactcgatagagctaccgagcttctccgtgctaataattacaacaacgcaggc
atgaatctgtggcgtgcgtcctttgatgagttcttcaacttactgatgaaacactgcata
agcaagtacgacagtataatgcagaacctgaattcgcaattgccaccacactttgccaca
gagatgtctgaagctgctgcacaagccattgtcagggaaatgcctatcgagcttctacga
gcgagtttcccgcacataagcgatgagcaaaagagaatacttgtggaattcttgaagctt
ggtagccagaaaaccgaatcagtcatagcttga
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