Arabidopsis lyrata (lyrate rockcress): 9329200
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Entry
9329200 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9329200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9329200
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9329200
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 related factors
9329200
Complex B
9329200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
9329200
NCBI-ProteinID:
XP_020870733
LinkDB
All DBs
Position
Unknown
AA seq
827 aa
AA seq
DB search
MDVDEETKPENDGDAKMVDLENETAATVYESGGDGAADEEEIDPLDAFMNTMVLPEVEKL
SNGAPPPAVNDGILDSKMNGKESDDQPKKGFNKALGRIIQGEDSDSDYSEPKNDDDPSLD
EDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELK
VHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSG
KTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYG
GSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEP
QITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRP
ESDRFFRLLELLGEWYEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDREST
ISDFKSNVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT
FISEDDAKYAPDLVKALELSEQPVPDDLKALADGFMAKVKQGIEQAHGTGYGGSGFKFNE
EEEEVRKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKA
AAAPVSAPVTANQLLPNGGGLAAMPGVLPVTVPTLPSEGAGRAAAMVAAMNLQHNLAKIQ
ADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGER
KLYLFIEGPSEKSVKQAKVELKRVLEDITNQAMSSLPGGATGRYSVL
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatgaagagactaaacctgaaaatgatggagatgccaagatggtagacttg
gagaatgagacagctgctactgtctatgagagtggaggtgatggagctgcagatgaagag
gaaattgatcctttagatgcttttatgaatactatggtattacctgaggttgagaagctt
agcaatggtgctcctcccccagcagtgaacgatggtattttggattctaaaatgaatggg
aaggaaagtgatgaccagccaaagaaaggttttaataaggcccttggtaggataattcaa
ggtgaagattctgattcagattattcagaaccaaagaatgatgatgatccaagtttagat
gaagacgatgaggagttcatgaagagagtaaagaagacaaaagctgagaagttgtccctt
gttgaccactcaaaaatagagtatgagcctttccggaagaacttctatatcgaagtgaag
gatatctctaggatgacacaagaagaagttaacacttacagaaaggaattggagctgaaa
gttcatggaaaggatgttccaagacccataaagttttggcaccagactgggctaaccagc
aaaattttggatactatgaagaagcttaattatgaaaagccaatgcctattcaaacacaa
gcactcccaatcatcatgagcggtcgagactgcattggggttgcaaaaactggttcaggt
aaaacccttggttttgttttgccaatgctgaggcatatcaaagatcagcctcccgttgaa
gctggtgatgggccaattgggcttgtaatggcacctactagggagcttgttcagcagatt
cacagcgatatcagaaagttttctaagccattgggtatcagatgcgtccctgtgtatgga
ggatcaggagttgcccagcaaattagtgaacttaaacgaggtactgagattgttgtgtgc
actcctggcagaatgattgatatcctttgcacaagcagtgggaaaatcactaatctgcga
agagtcacatttttggtaatggatgaagctgatcgtatgtttgacatgggttttgagcct
caaattactcgtattattcaaaacattcgaccggagcgtcaaactgtgcttttttctgcc
acttttccacgccaagttgaaactttggcacgtaaagtcttgaacaagcctgtcgaaata
caagtcggtggaaggagtgttgtgaataaggatataactcagttagttgaagtcagaccg
gagagtgataggttctttagacttctggaacttcttggggaatggtatgagaaagggaaa
attctggtttttgttcagtcgcaggaaaaatgtgatgccttgtatagggatatgattaaa
tctagttacccttgtctgtctcttcacgggggtaaggatcagactgatcgtgaatcaact
atatctgattttaagagcaatgtctgcaatttgttgattgccacaagtgttgcggctagg
ggtctagatgtgaaagagcttgagttggttgtaaactttgatgcgcctaaccactatgaa
gattatgtgcatcgtgttggcaggacaggcagggcagggcgtaaaggctgtgctgtaaca
tttatctccgaggatgatgcaaaatatgcaccagatttagtcaaggccctggaactttct
gagcagccagttcctgatgatctgaaagcacttgctgatggtttcatggcgaaagtgaaa
cagggtattgagcaagctcatggaactggctatggtggtagtggctttaaattcaacgaa
gaggaggaagaagtcagaaaagcagcaaagaaagcacaagcaaaggagtatggctttgag
gaagacaagtctgactcagaagatgagaatgatgtagtaagaaaggcaggtggtggtgag
atctcacagcagcaggctacttttgctcagatagctgccattgctgctgctgccaaagct
gctgctgctccagtgagtgctcctgtgacagctaaccaattgctgccaaatggtggcggg
cttgccgccatgccaggtgtccttccagttactgttcctacccttcctagtgaaggggca
ggccgtgctgcagccatggttgctgccatgaatctgcaacataacctggcaaagattcaa
gcggatgcaatgcctgagcactatgaagcagaacttgaaatcaatgatttcccacaaaat
gctcgttggaaggtcacccacaaagaaactttgggtcctatatcagagtggactggagcc
gctattaccaccaggggtcagttttatcctacaggacgtataccgggacctggggaacgg
aagctgtacttattcattgaagggcctagcgaaaaatcagttaagcaagcaaaagttgaa
ctcaagcgtgttctcgaagacattacaaatcaggccatgtcgtcacttcctggaggagca
accggcagatactcagtcctttaa
DBGET
integrated database retrieval system
