Alteromonas mediterranea DE1: amad1_08355
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Entry
amad1_08355 CDS
T02340
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
amad1_08355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_08355
Enzymes [BR:
amaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
amad1_08355
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
amad1_08355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFV85182
LinkDB
All DBs
Position
complement(1878963..1882460)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATLLSLPLPAPKREAASQDHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMK
LEKEIAFFLSDNKHNTPITLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGDGIFIVP
VNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSII
DLFPMGSDQPFRIDLFDDEIDSIRYFDTETQRSGESVNKIRLLPAREFPTDKEAITLFRQ
QFLEKFDANNASESVFSQVSKGTMPSGVEYYLPLFFKNTATLFDYLHPKSLLLLHGDVQD
ASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLTNTVLEEKPGT
TNLQCEKLDDIAINSQKKVPAERLIKTVNHATDNGAKVLFCAETQGRREGLLTVLAKAGI
KPTIVDSYSDFIASHNSIGITVGMVDNSFRWQTEEGELLFITETELLGQKVSQRRLRDKR
TATDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVTTEYLCIEYAKQSKLYVP
VASLHLISRYTGGDADSAPVSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFE
YKINWDDYQAFADSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAA
FLAANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEG
KVDIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRT
LNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVESI
ARTVEEIAEIVPEARIAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGIDVPSANT
IIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAG
FALATHDLEIRGAGELLGDDQSGQIASVGFSLYMDMLDKAVNALKDGREPSLDDAMSGHT
EVELRIPALLPEDYIADVNTRLSLYKRLASCATQDDIDEFQVECIDRFGLLPEPAKNLIE
VAEIKLKAHDLGILKVDLSAQGGTIEFKENTKVNPGYIISLVQTKPNTFKFEGSQKLRLV
KKTDTAKARIAFISDIIADFAKESR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacagccactttattatcgctaccattacctgcgcctaaaagagaagccgcttcacaa
gaccacaagcattggggccagcttcaaggcagcagcgccgcgctatgtatcagtcaagca
cttagccagtataaaggccctattgtacttatcaccgccgacacgccttcggcgatgaag
cttgaaaaagaaatagcgtttttcttaagcgataataagcataatacgcccattacgctt
ttccctgactgggaaacgctgccttatgactcgttctcgccccatcaggatattgtttcc
cagcgtttagaaaccctgtttcgttttactcagcaaggcgatggcattttcattgttcct
gttaacacgctaatgcagcgtctagcgcccaccgactatttggctaagtacttactgatg
ctaaacaagggcgacacgttagacagagaccaattcagacgaaatctagagcaagccggc
tacttacatgtaagccaagtaatgagccatagcgaattttctgtgcgcggcagtattatc
gacttgttcccaatgggaagcgaccaaccgtttcgtatcgacttattcgacgatgaaata
gactctattcgctacttcgatacagaaacccagcgttctggcgagtcagtcaataaaata
cgtttgttgccagcccgtgaattccctaccgataaagaggccattacgctttttcggcag
cagtttttggaaaagttcgatgcgaacaacgcgtcagaaagcgtattttcccaggttagc
aaaggcacaatgcctagcggtgtggaatactaccttcctctgtttttcaaaaacaccgca
acgctgtttgactacctgcatccaaagagcctgctgctacttcacggcgatgtacaagac
gccagtgagtttttctgggccgacgtacaagagcgctacgagcagtatcgatataattta
gcgcgccccctgcttgcgcctgatgaactctttttacctataaacgaactgtttggcgca
attaagcagtggccccgcgcatcgttaaccaacaccgtacttgaagaaaagccgggcacc
actaatttacagtgcgaaaagcttgatgacattgccattaactcgcagaaaaaagtgcct
gccgagcgcttaattaaaacagtaaaccacgccaccgacaacggggctaaagtactgttt
tgtgcagaaacccaaggccgtcgagaaggcctgctgacggtgcttgctaaagccggcata
aagcccactatcgtagacagttacagtgatttcatcgcaagccacaacagtattggtatt
acggttggcatggtggataacagcttccgctggcaaaccgaggaaggcgagctgctgttt
attactgaaaccgagctgctaggccaaaaggttagccagcgtcgcctacgtgataaaaga
accgctaccgatgaaagcgccattattcgcaacttggccgagctttctattggccaaccc
gtggtgcatttagatcacggcgtaggtcgctatttagggctacaaaccctcgacgcgggt
ggcgtaaccacagaatatctgtgtattgaatacgctaaacaatcgaaattatatgtaccg
gtagcctcgcttcatttaatttctcgctacaccggtggcgatgcagacagcgcgccagtt
agcgccttaggctcagacgcgtggacgaaagcgaagcaaaaggcggctgaaaaagtacgt
gacgtagccgctgagctgttagacgtatacgcgcgacgcgcggcgaaacccggcttcgaa
tacaagattaactgggacgattatcaagcctttgccgatagttttccttttgaagaaaca
cccgatcaagcccaagctattgcagcggttatgcatgacatgggcagcccgtcagccatg
gaccgcctagtatgcggagacgtaggctttggtaaaactgaagttgccatgcgtgccgct
ttccttgccgcaaatgcaggtaaacaagtggctattttggtgccaacaacgctacttgct
cagcagcattatgaaaactttaaagaccgcttcgcagcctggccgttcgaaattgaagta
atgagccgttttgttagcggcaaagcccaaaagtcggtggttgaacgtattggcgaaggt
aaagtagacattgttgtgggaacccacaaactgctttctagcgatataaagtacaaagac
ttaggccttgtcatcatagacgaggaacaccgcttcggtgttcgccaaaaagaaaaactg
aaatcgctgcgcgccgatgttgatattctcacgcttaccgcaacccctattccacgtacg
ctaaacatggccctttccggcatgcgcgacttgtcgattatcgccaccgcccctgcccgt
cgtttgtctattaaaacgtttgtgcagcagcgcaataaagcggttattcgcgaagccatt
atgcgtgaaattttacgcggtggtcaggtttacttccttcacaatgaagttgaaagcatt
gcacgaaccgtagaagagattgccgaaattgttcccgaagcacgcattgcaatggggcac
ggccaaatgcgcgagcgcgagttggaaagcgtgatgagcgacttttatcaccagcgctac
aacgtgcttgtgtgtaccaccattatcgaaacgggcattgatgtacctagtgcgaacacc
attattatggatagagccgaccatttaggtttagcgcagcttcaccaactgcgcgggcgt
gtgggccgttcacatcaccaagcttatgcgtatctgctaacgccgcatcctaagcgcatg
acaaaagatgccgtgaagcgcttagaagcgatatctcagttagaagacctaggtgcaggt
ttcgcactggctactcacgatttagaaatacgtggtgcaggcgagcttttaggcgacgac
caatcgggtcaaatcgcaagcgtagggtttagcctttacatggacatgcttgataaagcc
gttaatgcccttaaagacggcagggagccgtcgctagacgatgcgatgtctggccatacc
gaagtagagcttcgcattcctgccctattaccggaagattacattgccgatgtaaacaca
cgcttatcactgtataagcgcttggcgagctgtgcgacgcaagatgacattgatgagttc
caggtagaatgtatcgaccgttttggcctgctgccagagccggcgaagaacttaattgaa
gtggctgaaattaaactaaaagcccatgatttaggcattctaaaagtagacttgtcggca
caaggcggtaccatagagttcaaagagaacacgaaggtcaatccgggctatattattagc
cttgtacaaaccaagccgaacaccttcaaatttgaaggcagccaaaaactgcgtttggtg
aaaaagaccgacacagctaaagcgcgaattgcgttcattagcgatattattgccgatttt
gcaaaggagtcgcggtaa
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