Alteromonas macleodii ATCC 27126: MASE_09265
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Entry
MASE_09265 CDS
T02246
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amac
Alteromonas macleodii ATCC 27126
Pathway
amac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MASE_09265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amac03019
]
MASE_09265
Enzymes [BR:
amac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MASE_09265
Messenger RNA biogenesis [BR:
amac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MASE_09265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_25
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
AFS37384
LinkDB
All DBs
Position
complement(2178772..2180223)
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AA seq
483 aa
AA seq
DB search
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL
QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQ
SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVAT
DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET
LIQKLLPRETLEGFEPQQAVPVTTLSKPKKPKKPKKPKAPQGESGSEGKRSGENKKSGQR
QGNRSGNGNPRAGKSDSRNNSGGKPAGRRRSGSEGSAAKRPAKRRSNPSNSTTNNTASNR
AKA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccaattagggctcgctgaacccttgttaaaagctattgaaaaacgagga
tttagtacaccatcaccaatccaggaaaaggcaataccagaagtattgcaaggaaaggat
gtgttggcagctgcgcaaacgggaacagggaaaactgcaggatttggacttcctatttta
cagagattgatggaaggacaacctgtatctggcaacaatgttcgggcacttatcttaaca
cccacgcgagaacttgctgctcaggtagaagaaagcatcagagcgttcagcgagtttttg
ccgttaaaaactgccgtggtatttggtggtgtagggattaatcctcaaatgatgaagctg
cgtaaaggtgtggatgtgttaattgctacgcctggacgattacttgacctctaccagcaa
aacgctgttaagttttctcagcttgaagtgttggtattggatgaagccgacagaatgctt
gatatgggctttattcacgacattaggagagtattgaagctattgccacaagagcgtcaa
agcttactgttttcagccacgttttctgatgaaatcactgcactggcgaaaacaataacg
cgcaaccctgtgagtatttcaaccgcgccagccaataccacggtagaagcggttcaacag
cacttagtgaccattgataaatctaaaaagacgaccgcgcttatttgtctgatcaaacag
caaaagtgggagcaggtgttagtgtttagccgcacgaaacacggtgctaaccgtattgca
gaaaagctaactcggtcaaaaattccaagtgccgcgattcacggtaataaaagccaagga
gcgagaactaaagcgcttgctgactttaaaaatggcgcaattaaagtgctggtagccacc
gatattgcagcacgcggcatcgacattagtgaattgcctatcgttgtaaacctagactta
cccaatacggctgctgattatgttcaccgaattggtcgtacagggcgcgcaggcgctagt
ggacaggcttggtcatttgtatgtgctgaagaactgcaaaacctgaaagatattgagaca
ctgattcaaaaactgcttcctcgtgaaacgttggaaggtttcgagcctcagcaagccgtg
cctgttaccacgctttctaagcctaaaaagcccaagaagccgaaaaagccgaaagcacca
caaggtgagagcggcagcgaaggtaaacgaagtggcgagaataaaaagtcgggtcaacgt
caaggcaaccgtagcggaaatggtaatccgcgcgcaggtaaatcggattcgcgcaacaat
agcggtggaaagcctgcaggtcgaagacgctcaggaagtgaaggaagtgccgctaaacga
ccagctaagcgcagaagtaatccgtcaaatagcaccactaataatacggcgtcaaacagg
gcaaaagcgtaa
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