Alteromonas mediterranea MED64: I533_07935
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Entry
I533_07935 CDS
T02958
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I533_07935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_07935
Enzymes [BR:
amag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I533_07935
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I533_07935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGP81563
LinkDB
All DBs
Position
complement(1769018..1772515)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATLLSLPLPAPKREAASQDHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMK
LEKEIAFFLSDNKHNTPITLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGDGIFIVP
VNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSII
DLFPMGSDQPFRIDLFDDEIDSIRYFDTETQRSGESVNKIRLLPAREFPTDKEAITLFRQ
QFLEKFDANNASESVFSQVSKGTMPSGVEYYLPLFFKNTATLLDYLHPKSLLLLHGDVQD
ASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLSNAVLEEKPGT
TNLQCEKLDDIAINSQKKVPAERLIKTVNHATDNGAKVLFCAETQGRREGLLTVLAKAGI
KPTIVDSYSDFIASHNSIGITVGMVDNSFRWQTEEGELLFITETELLGQKVSQRRLRDKR
TATDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVTTEYLCIEYAKQSKLYVP
VASLHLISRYTGGDADSAPVSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFE
YKINWDDYQAFADSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAA
FLAANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEG
KVDIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRT
LNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVESI
ARTVEEIAEIVPEARIAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGIDVPSANT
IIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAG
FALATHDLEIRGAGELLGDDQSGQIASVGFSLYMDMLDKAVNALKDGREPSLDDAMSGHT
EVELRIPALLPEDYIADVNTRLSLYKRLASCATQDDIDEFQVECIDRFGLLPEPAKNLIE
VAEIKLKAHDLGILKVDLSAQGGTIEFKENTKVNPGYIISLVQTKPNTFKFEGSQKLRLV
KKTDTAKARIAFISDIIADFAKESR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacagccactttattatcgctaccattacctgcgcctaaaagagaagccgcttcacaa
gaccataagcattggggccagcttcaaggcagcagcgccgcgctatgtatcagtcaagca
cttagccagtataaaggccctattgtacttatcaccgccgacacgccttcggcgatgaag
cttgaaaaagaaatagcgtttttcttaagcgataataagcataatacgcccattacgctc
ttccctgactgggaaacactgccttatgactcattctcgccccatcaggatattgtttcc
cagcgtttagaaaccctgtttcgttttactcagcaaggcgatggcattttcattgttcct
gttaacacgctaatgcagcgtctagcgcccaccgactatttggctaagtacttactgatg
ctaaacaagggcgacacgttagacagagaccaattcagacgaaacctagagcaagccggc
tacttacatgtaagccaagtaatgagccatagcgaattttctgtgcgcggcagtattatc
gacttgttcccaatgggaagcgaccaaccgtttcgtatcgacttattcgacgatgaaata
gactctattcgctacttcgatacagaaacccagcgttctggcgagtcagtcaataaaata
cgtttgttgccagcccgtgaattccctaccgataaagaggccattacgcttttccggcag
cagtttttggaaaagttcgatgcgaacaacgcgtcagaaagcgtattttcccaagtaagc
aaaggcacaatgccaagtggcgtagaatactaccttcctctgtttttcaaaaacaccgca
acgctgcttgattacctgcatccaaagagcctgctgctgcttcacggcgatgtacaagac
gccagtgagtttttctgggccgatgttcaagagcgctacgagcagtatcgatataattta
gcgcgccccctgcttgcgcctgatgaactctttttacctataaacgaactgtttggcgcg
attaagcagtggccccgcgcgtctttatccaacgccgtacttgaagaaaagccgggcacc
actaatttgcagtgcgaaaagcttgacgacattgctattaactcgcagaaaaaagtgcct
gccgagcgcttaattaaaacagtaaaccacgccaccgacaacggggctaaagtactgttt
tgtgcagaaacccaaggccgtcgagaaggcttgctgacggtgcttgctaaagccggcata
aagcccactatcgtagacagttacagtgatttcatcgcaagccataacagtattggtatt
acggttggcatggtggataacagcttccgctggcaaaccgaggaaggcgagctgctgttt
attactgaaaccgagctgctcggccaaaaggttagccagcgtcgcctacgtgataaaaga
accgctaccgatgaaagcgccattattcgcaacttggccgagctttctattggccaaccc
gtggtgcacttagatcacggcgtcggccgctatttagggctacaaaccctcgacgcgggt
ggtgtaaccacagaatatctgtgtattgaatacgctaaacaatcgaaattgtatgtaccg
gtagcctcgcttcatttgatttctcgctacaccggtggcgatgcagacagcgcgccagtt
agcgccttaggctcagacgcgtggacgaaagcgaagcaaaaggcggctgaaaaagtacgt
gacgtagccgctgagctgttagacgtatacgcgcgccgcgcggcaaaacccggctttgaa
tacaagattaactgggacgattatcaagcctttgccgatagttttccctttgaagaaaca
cccgatcaagcccaagctattgcggcggttatgcatgatatgggcagcccgtcagcgatg
gaccgcctagtatgcggagacgtaggctttggtaaaactgaagttgccatgcgcgccgct
ttccttgccgcaaatgcaggtaaacaagtggctattttggtgcctacaacgctacttgct
cagcagcattatgaaaactttaaagaccgcttcgcagcctggccgttcgaaattgaagta
atgagccggtttgttagcggtaaagcgcaaaagtcggtggttgaacgtattggcgaaggt
aaagtagacattgtcgtgggaacccacaaactgctttctagcgatataaagtacaaagac
ttaggccttgtcataatagacgaggaacaccgcttcggtgttcgccaaaaagaaaaactg
aaatcgctgcgcgccgatgttgatattctcacgcttaccgcaacccctattccacgtacc
ctaaacatggccctttccggcatgcgcgacttgtcgattatcgccaccgcccctgcccgt
cgtttgtctattaaaacgtttgtgcagcagcgcaataaagcggttattcgcgaagccatt
atgcgtgaaattttacgcggtggtcaggtttacttccttcacaatgaagttgaaagtatt
gcacgaaccgtagaagagattgccgaaattgttcccgaagcacgcattgcaatggggcac
ggccaaatgcgcgagcgcgagttggaaagcgtgatgagcgacttttatcaccagcgctac
aacgtgcttgtatgtaccactattatcgaaacgggcattgatgtacctagtgcgaacacc
attatcatggatagagccgaccatttaggtttagcgcagcttcaccaactgcgcgggcgt
gtgggccgttcacatcaccaagcttatgcgtatctgctaacgccgcaccctaagcgcatg
acaaaagatgccgtgaagcgcttagaagcgatatctcagttagaagacctaggtgcaggt
ttcgcactggctactcacgatttagaaatacgtggtgcaggcgagcttttaggcgacgac
caatcgggtcaaatcgcaagcgtagggtttagcctttacatggacatgcttgataaagcc
gttaatgcccttaaagacggcagagagccgtcgctagacgatgcgatgtctggccatacc
gaagtagagcttcgcattcctgccctattaccggaagattacattgccgatgtaaacaca
cgcttatcactgtataagcgcttggcgagctgtgcgacgcaagatgacattgatgagttc
caggtagaatgtatcgaccgttttggcctgctgccagagccagcgaagaacttaattgaa
gtggctgaaattaaactaaaagcccatgatttaggcattctaaaagtagacttgtcggca
caaggcggtaccatagagttcaaagagaacacgaaggtcaatccgggctatattattagc
cttgtacaaaccaagccgaacaccttcaaatttgaaggcagccaaaaactgcgtttggtg
aaaaagaccgacacagctaaagcgcgaattgcgttcattagcgatattattgccgatttt
gcaaaggagtcgcggtaa
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