Alteromonas mediterranea MED64: I533_11255
Help
Entry
I533_11255 CDS
T02958
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I533_11255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_11255
Enzymes [BR:
amag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I533_11255
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I533_11255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DUF5321
ResIII
AAA_11
ParB
GatB_Yqey
DUF3067
Motif
Other DBs
NCBI-ProteinID:
AGP82219
LinkDB
All DBs
Position
complement(2522679..2526689)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSNITPSSASDMATQTQLETNKKANNDAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLY
LRLLLEKKLTVKEILVMTFTKAATEEIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVY
QHLFTRCNTDESMALLNAAQLELDEASVFTIHGFCQHVITQLAFNSGFAMSLNLGNDTSD
LYLQAAEDYIRKVSKNEDDFRLLAESGWHTPERLLLEFNASIKSTLTPLMLSEQDIELAY
QRQLDESPHTSVAYVKTLSQSVEDNEGLLVEQLIKTPAHKKERPQELAALKSWLRSCADS
GQYYLPPPEAEAFVKGTRYARNSSGVKEILTPIKEFAAALKKVFGEKDKALAKVPVFKLV
VEAIAFIKGRVDKQKKQLGVIDFDDLIRMLADEVVKPNNTLVPELRKKFPVALIDEFQDT
DAKQYAILDAVYPNASSNSASQTETDLSNDNEESASARVSALLMIGDPKQAIYRFRGGDI
FTYLKAGRQADYRWVMNTNWRSVEGMVKAYNRLFYGAPVASNTPTDVFGFDIKYNPVEFT
PKAAAAKTPLIDPAAQRSAMNYVSLCLEEKENTNIMRRKMAQWIAQEIYRLLNEAQFQLD
NGETKPVKPQDIAILVKDRTEAGAIKNVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNG
IWHANDTSNVSSSLASPLWGYSPQTLIELLYHEDDTMWDKAMDKVLSLRDMWLQKGCMSV
LLHLMQDSYVPHADNVERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKPESDEEL
TLRLESDSQLIRLITQHGSKGLEYPIVFVPYATGYKDASKNGKSTSQIFTFYDEDKQDLQ
MQLGQTAQAIARVQRESEAEDMRLAYVAVTRAAHRCYMGVIPLANNEKSALARALGVSGD
ESTNRDWQSVLRRVAEEDESHASYIDGDEFEEIYSGFEQGDAIPQLTALQFTGTASEEWR
LYSFSAMSRLTTVGSVKSTDTVEGAGQSLPSVPVLQTVRDEEVYALDTLSTDGEILGAID
VDSHTPLTQTSAVTKNDLRFTLEKGASAGNLLHDILEHSDFSAPVWEESGKELVNRFGLE
EKRTPFLYEWLEEVLQTPLYPNMQLCMSDLTLEQTLREAEFYFPMNDTQWKQLREVLNTH
RQSVAETLGGEAEPAPQFITAKLKGMMHGFIDLIFEHDGQFFVADYKSTWLGDTLESYMP
SGLFHNNQHHLYDLQYLIYCLALHRYLSNTLPDYDPDIHFGGVYYLYLRGMHPENEQGEG
VFYTHIPSSLLHQLDAIFASKGTTHTPPDPLDNGDENEAPLSERDSADPLQKGTNANSSS
ESQKPSGQQQFSFDDE
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatattaccccatcctctgcaagcgatatggcaacccaaacccagcttgaaacc
aataaaaaggccaacaatgacgcgcaactgcttgatgtggtagcaatgccattaaaaggg
cggcatctaatagaagccagcgcagggacgggtaaaacctttaacattacccggttatat
ttgcgcttactgttagaaaaaaagctgacggtaaaagaaatattggtaatgacgttcacc
aaagctgccaccgaagaaataaaagggcgtattgccaaaaccttaagagaggcgtttctg
atttggcagcaagccaaagagaatgacaatcaaattgacagcaactgcgaccctgtttat
cagcatttgtttactcgctgtaataccgacgaaagcatggctttgctaaatgctgcacag
ttagaacttgatgaagcgtcggttttcactattcacggcttctgccagcacgtcattacc
caattggcgtttaacagtggttttgccatgtcgttaaacttaggtaatgacactagcgat
ttgtaccttcaggcggcagaagactacattcgaaaggtgagcaagaacgaagacgatttt
aggctgttggcagagtcagggtggcatacacctgaaaggctgttactggagtttaatgcc
agcattaaaagtactctgaccccattaatgcttagcgagcaggatattgagcttgcctat
caaaggcagctagatgaatcgccgcatacttctgtagcctacgtaaaaacgctatcgcaa
agcgtagaagataatgaggggttgttagttgagcagcttattaaaacacctgctcataag
aaagaaaggccgcaggaattggccgcattaaagagctggttacgttcatgcgcagatagc
gggcaatattacttacccccgcctgaagcagaggcatttgttaaaggcactcgctacgcg
agaaattcttcaggggtaaaagaaatactaacgccgattaaagaatttgctgctgcattg
aaaaaagtattcggcgaaaaggataaggcactggctaaagtacccgtgtttaagctggtt
gtagaagccattgcgttcattaaagggcgcgttgataaacagaaaaagcaacttggtgtt
atcgattttgacgatcttattcgcatgttagccgatgaggtggttaagcctaacaatacg
cttgtccctgaacttcgtaaaaaatttcctgtggcgcttattgatgagttccaagatacc
gatgccaagcaatacgctattttggacgcggtttatcccaatgcatcgagcaattcggcc
tcacaaacagaaacagatctttcaaacgataacgaggagagcgcgtcggcaagagtcagt
gcgttattaatgattggcgaccctaaacaggcgatatatcgctttcgcggaggggatatc
ttcacctacttgaaagcgggcagacaagcagactatcgctgggtaatgaacaccaactgg
cgctcggtagaggggatggtaaaagcctataaccggttattttatggtgcacctgtggca
tcaaataccccaactgatgtgtttggctttgatatcaaatacaaccccgttgaatttacg
cccaaagcggcagcggctaaaaccccattgatagaccctgcagcgcagcgtagcgcgatg
aattacgtgagcctgtgtttggaagagaaagaaaataccaacattatgcgtcgtaaaatg
gcgcagtggattgcgcaagagatttatcgcctgctaaacgaggctcaatttcaattggac
aacggcgaaacaaaaccggtaaagccgcaagatatcgctatcttggtaaaagacaggacc
gaagccggcgctatcaaaaacgttctacagcaaaaagggttagcctgcgtttatttaagt
gatcgcagcaacttgtttgccagtgccgaagcgaaagatgtacttaggcttttaaacggt
atatggcatgcgaacgatacaagcaacgtttcctctagcttagcatctccgctttggggc
tatagcccgcagaccctcattgaactgctttaccacgaagatgatactatgtgggataaa
gcgatggacaaagtattgtctttacgcgacatgtggcttcaaaaaggctgtatgagcgta
cttctgcacctaatgcaagacagctacgtcccccatgctgataacgtggagcgcgcgctt
acaaactatcagcatcttgccgaagtgctggaaaaagccagtaccacgcaccagcgaccc
gaacagctactcgactggttaaataaacaaattcacaagccagaaagtgatgaagaactt
acgttacgccttgaaagtgacagccagctaattcgccttattacccagcacggttcaaag
ggccttgaataccccatcgtgtttgttccttacgcaaccggctataaggatgcatcgaaa
aatggtaaatctacgtcacaaatatttaccttttacgatgaagacaagcaagatttgcaa
atgcagttaggacagaccgctcaagctatagctcgtgttcaacgcgaaagcgaagcagaa
gacatgcgccttgcttatgttgcggtgacgcgtgcggcacaccgttgttacatgggggtt
attccactggctaataacgaaaaaagcgcgctggcccgcgccttgggcgtgagtggcgat
gagagtacgaacagagactggcagagtgtattacgccgtgtcgccgaggaggatgagtct
catgctagctatattgacggcgatgaatttgaagaaatctattcaggttttgaacaaggt
gacgcgatacctcaactcacagcactacaatttacgggtactgcaagcgaagaatggcgg
ctctattcattttcagccatgagccgtttaactaccgtaggctcggtgaaaagtacagat
actgttgagggcgcgggtcaaagccttccaagcgtacctgtacttcaaaccgtacgcgat
gaagaagtgtacgcgctcgatacgctttccactgacggagagatacttggcgctatagat
gtagactctcacaccccgttgacacaaacgagcgcagtaacgaaaaatgacttgcgcttt
acgctagaaaagggcgcaagtgcaggtaacttacttcacgatatcttagaacacagtgat
tttagtgcgccggtgtgggaagaaagtggcaaagagttagtgaatcgctttgggttagag
gaaaagcgtacgccttttctttacgagtggcttgaagaagttttacaaacgcctttgtac
cccaatatgcaattgtgtatgagtgacttgacgttagagcaaactctgcgcgaggctgag
ttttattttccaatgaacgatacccagtggaaacagcttcgagaagtgcttaatacccat
cggcaaagcgtggcggaaaccttaggcggtgaggctgaaccggctccccagttcattacg
gctaaacttaaaggtatgatgcatggatttatcgatttaatttttgaacatgacggtcag
ttctttgtagccgattacaagtcaacctggctgggtgatacccttgaaagctacatgcct
tcaggtctgtttcacaataatcagcaccacctttatgatcttcagtatttaatctactgc
ttagcgttacaccgctatttaagcaatacgctgcctgattatgaccccgatatccatttt
ggcggcgtttattacctttatttacgtggtatgcacccagagaacgagcaaggtgaaggg
gtgttttatacccatattccatccagtttacttcatcaattggacgctattttcgcaagt
aaaggcactactcacacccctccagacccgctagataatggggatgaaaacgaagcaccg
ttaagtgaacgagattcggctgacccacttcaaaaaggtacgaatgctaattcttcaagt
gaaagccaaaagccttcgggtcagcagcaatttagtttcgacgacgaatag
DBGET
integrated database retrieval system
