Akkermansia massiliensis: J5W79_08060
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Entry
J5W79_08060 CDS
T09439
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amak
Akkermansia massiliensis
Pathway
amak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5W79_08060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amak03400
]
J5W79_08060 (mfd)
Enzymes [BR:
amak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5W79_08060 (mfd)
DNA repair and recombination proteins [BR:
amak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5W79_08060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QWP72318
LinkDB
All DBs
Position
complement(1936733..1939909)
Genome browser
AA seq
1058 aa
AA seq
DB search
MAEDASITALMDRVARTAPFHRELAKLGTEEQAVFDHTSLPGVPFVAALCIRTIPDTARA
WVIAPHLRAQESLAAQLETWGVRNILFVPEKEVALGEEVGDPELAAERLNVLHRIASGHV
GRQTVVLTEGSLNDEVPSPDGMQNQGMTLKTGETHAPDDLIRLFEEEGFEGVPQVISRGQ
WSRRGGILDVFPLQSSHPVRLEFFDDEIESIREFDVDSQISFRKTEHVNLVLTEAAGVET
LRAWIKPGDLVITAPFCKERGNVCILTAPPENAEGEEDFSLAIHDNPLGSFDAGDFVMQE
IRRELAERQIREWLDRKWNVSMFFPNEGEEERFRDICAGTPALLSITALRGDLPGGFSIP
GAKTAVLSSSELFGRYQSATARRRASREDKARKARAQASLKDINPGDLVVHTSYGIGKFI
NISTSPDSGDEEMNILYRDNTILHVPLSQAHLVSRYIGLGSKTPELNKLGDSKWQRAKKS
AERSVADYAAQLLNVQAERQTGKGYSHPPDSKWMWEFESSFPFRETQDQLRAIAQTKADM
EATRPMDRLICGDVGFGKTEVAIRAAFKCVTGGRQVAVLVPTTVLAEQHFRTFKERMSEY
PVRIEMLSRFSSAADVRSTLEGLKSGAVDIVIGTHRLISEDVSIKNLGLVVIDEEQRFGV
RHKEKFKERFKGIDVLTLSATPIPRTLYIALMGARDMSSIETPPVNRQPVQTSVCPYDER
IMKKAMERELERGGQIFLLHNRVKTIELFRDRIQALVPKARIVIGHGQMPKDELEKVMRT
FVQGKADILLATTIIESGIDIPNANTIIIDRADRFGLADLYQLRGRVGRAGHRAYAYLML
PRSAATTGDARKRVSAIKQYTELGSGFKIAMRDLEIRGAGNLLGTQQSGHIAAIGFDLYC
QLLQQSIAHMQGRHTAPRPDAALRTDFIVNSETQFAAKSRKDYLGAFLPRDYISDAALRI
SAYKDLAAVRTLKEADALLRAWEDRFGPAPETVHHLLDSHKIKILASKANISMVEISGQR
LMLTRNGDFILLSNKFPRLAGVSPADKLREALEMLKNI
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacgcttccataaccgccctgatggacagggtggcccgcaccgcacccttt
caccgggaactcgcgaaactgggcacggaggaacaggcggttttcgaccatacctccctg
cccggggttccgttcgtggcggccctgtgcatcaggaccattccggacaccgcccgggcc
tgggtgatcgcgccccatctgcgcgcgcaggaatcccttgccgcgcaactggaaacatgg
ggagtgcgcaacatcctcttcgtcccggaaaaagaggtggccctgggggaggaagtggga
gacccggagcttgccgcggaacggctgaacgtccttcaccgcatcgcttccggccatgtg
ggcaggcaaaccgtcgttctgacggaaggcagcctgaatgacgaggttccctcccccgac
ggcatgcagaaccagggaatgaccctgaaaacgggagaaacgcacgcccctgacgatttg
atacggctgtttgaggaggaggggttcgagggcgttcctcaggtcatttcccgcgggcag
tggtcccgccgcggcggcattctggacgttttcccgctccagtcctcccatcccgtacgc
ctggagttttttgacgacgagattgaatccatccgggaatttgacgtggactcccagatt
tccttccggaagacggagcacgtcaacctcgtcctgacggaagcggcaggcgtggaaacc
ctgcgggcctggatcaagccgggcgacctggtcattacggcccctttctgcaaggaacgg
gggaacgtgtgcatcctcaccgcaccgccggagaacgcggagggggaggaggacttctcc
ctggccatccatgacaatcccctgggcagctttgacgccggggacttcgtgatgcaggag
atccggcgggagctggcggaacgccagatccgagaatggctggaccggaaatggaacgtc
agcatgttttttcccaacgaaggggaggaagagcgcttccgggacatctgcgccggaacg
cccgcgctgctgtccatcaccgccctgcgcggggacctgcccggcggcttcagcattccg
ggggcaaaaacggccgttctctcctcctcggagctgttcggcaggtaccagtccgccacg
gcgcgccgccgcgccagccgggaggacaaggcccgcaaggcccgcgcgcaggcctccctg
aaggacatcaaccccggagacctggtggtgcacaccagctacggcatcggcaaattcatc
aacatttccacctctccggactccggagacgaggaaatgaacatcctttaccgggacaat
acgatcctgcacgtccccctcagccaggcgcacctggtttcacggtacatagggctgggc
agcaagacgccggaactcaacaagctgggggattccaaatggcagcgcgccaaaaagtcc
gcggaacgctccgtggcggactacgccgcccagctcctcaacgtgcaggcggaacgccag
accggaaagggctacagccaccctccggacagcaaatggatgtgggagtttgaaagctcc
ttccccttccgggagacccaggaccagctccgcgccatcgcccagacgaaggcggacatg
gaagccacccgccccatggaccgcctgatctgcggagacgtgggcttcggcaagacggag
gtggccatccgcgccgccttcaaatgcgtgacgggaggccgccaggtggccgtgctggtg
cccaccaccgtgcttgcggaacagcacttccgcaccttcaaagagcgcatgagcgaatac
cccgtgcggattgaaatgctcagccgcttcagcagcgcggcggacgtccgctctacgctg
gaagggcttaagtccggggccgtggacatcgtcatcggcacgcaccgcctcatctccgag
gacgtgtccattaaaaacctgggcctcgtggtgattgacgaggaacagcgcttcggcgtc
aggcacaaggagaaattcaaggaacgcttcaaaggcatcgacgtgctcacgctgtccgcc
acgcccattccccgcaccctgtacattgcgctgatgggagcgagggacatgagctccatt
gaaacgccgcccgtcaaccggcagcccgtgcagacgagcgtatgcccttatgacgaacgc
atcatgaagaaggccatggagcgcgaactggaacgcggcggccagattttcctgctgcac
aaccgcgtcaaaaccatcgaactgttccgggaccgcatccaggccctggtgcccaaggcc
cgcatcgtcatcggccacggacagatgcccaaggacgagctggagaaggtcatgcgcacc
ttcgtgcaggggaaggcggacatcctgctggcaaccaccatcatcgaatccggcatcgac
atcccgaacgccaacaccatcatcattgaccgcgcggaccgcttcggcctggcggacctc
taccagctccgcggccgcgtgggccgcgcggggcaccgggcctacgcctacctcatgctc
cccaggtccgccgccaccacgggagacgcccgcaagcgcgtctccgccatcaagcagtac
acggagctgggttccggcttcaagatagccatgagggacctggaaatacgcggcgcgggc
aacctgctgggcacccagcagagcggccacattgccgccatcggctttgacctgtactgc
cagcttctccagcagtccatcgcccacatgcagggcaggcacacggccccccggccggac
gcggccctgagaacggatttcatcgtgaacagcgagacgcagttcgccgccaaatcccgc
aaggattatctgggcgccttcctgccccgggattacatcagcgacgcagccctgcgcatt
tccgcgtacaaggacctggcggcagtccgcaccctgaaggaggcggacgccctgctccgc
gcgtgggaagaccgcttcggccctgcaccggaaacggtgcatcacctgctggattcccac
aaaatcaagatactggcctccaaagcaaacatctccatggtggaaatcagcggacagcgc
ctgatgctcaccaggaacggggattttatcctgctgtccaacaaatttccgcggctggca
ggcgtctctcccgcagacaagctacgggaagcgctggaaatgctgaagaacatctaa
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