Alteromonas mediterranea U4: I607_07625
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Entry
I607_07625 CDS
T02720
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I607_07625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_07625
Enzymes [BR:
amal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I607_07625
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I607_07625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGP85323
LinkDB
All DBs
Position
complement(1694993..1698490)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATLLSLPLPAPKKEAASQDHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMK
LEKEIAFFLSDNKHNTPITLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGDGIFIVP
VNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSII
DLFPMGSDQPFRIDLFDDEIDSIRYFDTETQRSGESVNKIRLLPAREFPTDKEAITLFRQ
QFLEKFDANNASESVFSQVSKGTMPSGVEYYLPLFFKNTATLFDYLHPKSLLLLHGDVQD
ASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLSNAVLEEKPGT
TNLQCEKLDDIAINSQKKVPAERLIKTVNHATDNGAKVLFCAETQGRREGLLTVLAKAGI
KPTIVDSYSDFIASHNSIGITVGMVDNSFRWQTEEGELLFITETELLGQKVSQRRLRDKR
TATDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVTTEYLCIEYAKQSKLYVP
VASLHLISRYTGGDADSAPVSALGSDAWTRAKQKAAEKVRDVAAELLDVYARRAAKPGFE
YKINWDDYQAFADSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAA
FLAANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEG
KVDIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRT
LNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVESI
ARTVEEIAEIVPEARIAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGIDVPSANT
IIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAG
FALATHDLEIRGAGELLGDDQSGQIASVGFSLYMDMLDKAVNALKDGREPSLDDAMSGHT
EVELRIPALLPEDYIADVNTRLSLYKRLASCATQDDIDEFQVECIDRFGLLPEPAKNLIE
VAEIKLKAHDLGILKVDLSAQGGTIEFKENTKVNPGYIISLVQTKPNTFKFEGSQKLRLV
KKTDTAKARIAFISDIIADFAKESR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacagccactttattatcgctaccattacctgcgcctaaaaaagaagccgcttcacaa
gaccacaagcattggggccagcttcaaggcagcagcgccgcgctatgtatcagtcaagca
cttagccagtataaaggccctattgtacttatcaccgcagacacgccttcggcgatgaag
cttgaaaaagaaatagcgtttttcttaagcgataataagcataatacgcccattactctc
ttccctgactgggaaacgctgccttatgactcattctcgccccatcaggatattgtttcc
cagcgtttagaaaccctgtttcgttttactcagcaaggcgatggcattttcattgttcct
gttaacacgctaatgcagcgtctagcgcccaccgactatttggctaagtacttactgatg
ctaaacaagggcgacacgttagacagagaccaattcagacgaaacctagagcaagccggc
tacttacatgtaagccaagtaatgagccatagcgaattttctgtgcgcggcagtattatc
gacttgttcccaatgggaagcgaccaaccgtttcgtatcgacttattcgacgatgaaata
gactctattcgctacttcgatacagaaacccagcgttctggcgagtcagtcaataaaata
cgtttgttgccagcccgtgaattccctaccgataaagaggccattacgctttttcggcaa
cagtttttggaaaagttcgatgcgaacaacgcatcagaaagcgtattttcccaggttagc
aaaggcaccatgcctagcggtgtggaatactaccttcctctgtttttcaaaaacaccgca
acgctgtttgattacctgcacccaaagagcctgctgctacttcacggcgatgtacaagac
gccagtgagtttttctgggccgacgtacaagagcgctacgagcagtatcgatataattta
gcgcgccccctgcttgcgcctgatgaactctttttacctataaacgaactgtttggcgcg
attaagcagtggccccgcgcgtcgttatccaacgccgtacttgaagaaaagccgggcacc
actaatttgcagtgcgaaaagcttgacgacattgccattaactcgcagaaaaaagtacct
gccgagcgtttaattaaaacagtaaaccacgccaccgacaacggggctaaagtactgttt
tgtgcagaaacccaaggccgtcgagaaggcttgctgacggtgcttgctaaagccggcata
aagcccactatcgtagacagttacagtgatttcatcgcaagccacaacagtattggtatt
acggttggcatggtggataacagcttccgctggcaaaccgaggaaggcgagttgctgttt
attactgaaaccgagctgctaggccaaaaggttagccagcgtcgccttcgtgataaaaga
accgctaccgatgaaagcgccattattcgcaacttggccgagctttctattggccaaccc
gtggtgcacttagatcacggcgtaggccgctatttagggctacaaaccctcgacgcgggt
ggtgtaaccacagaatatctgtgtattgaatacgctaaacaatcgaaattatatgtaccg
gtagcctcgcttcatttgatttctcgctacaccggtggcgatgcagacagtgcgccagtt
agcgccttaggctcagacgcgtggacaagagcgaagcaaaaggcggctgaaaaagtacgc
gacgtagccgctgagctgttagacgtatacgcacgccgcgcggcgaaacccggctttgaa
tacaagattaactgggacgattatcaagcctttgccgatagtttcccctttgaagaaacg
ccagaccaagcacaagccatcgcagccgttatgcacgatatgggcagcccatctgccatg
gaccgactggtatgtggcgacgtaggcttcggtaaaactgaagttgccatgcgcgcggca
ttccttgccgcaaatgcaggtaaacaggtagctatattagtgccgactactctgcttgcg
cagcagcactacgaaaactttaaagaccgcttcgccgcttggccatttgaaattgaagtg
atgagccgctttgtaagcggtaaagcgcaaaaatctgtggtagagcgcatcggtgaaggt
aaagtagacattgtcgtgggaacccacaaactgctttctagcgatataaagtacaaagac
ttaggccttgtcatcatagacgaggaacaccgcttcggtgttcgtcaaaaagagaagcta
aaatctttacgtgccgatgtagatattctcacgcttaccgcaacccctattccacgtacg
ctaaacatggccctttccggcatgcgcgacttgtcgattatcgccaccgcccctgcccgt
cgtttgtccattaaaacgtttgtgcagcagcgcaataaagcggttattcgcgaagccatt
atgcgtgaaattttacgcggtggtcaggtttacttccttcacaatgaagttgaaagtatt
gcacgaaccgtagaagagattgccgaaattgttcccgaagcacgcattgcaatggggcac
ggtcaaatgcgcgagcgagagttggaaagcgtgatgagcgacttttatcaccagcgctac
aacgtgcttgtgtgtaccactattatcgaaacgggcatcgatgtacctagtgcgaacact
attattatggatagagccgaccatttaggtttagcgcagcttcaccaactgcgcgggcgt
gtgggccgttcacatcaccaagcttatgcgtatctgctaacgccgcaccctaagcgaatg
acaaaagatgccgtaaagcgcttagaagcgatatctcagttagaagacctaggtgcaggt
ttcgcactggctactcacgatttagaaatacgtggtgcaggcgagcttctaggcgacgac
caatcgggtcaaatcgcaagcgtagggtttagcctttacatggacatgcttgataaagcc
gttaatgcccttaaagacggcagagagccgtcgctagacgatgcgatgtctggccatacc
gaagtagagcttcgcattcctgccctattaccggaagattacattgccgatgtaaacaca
cgcttatcactgtataagcgcttggcgagctgtgcgacgcaagatgacattgatgagttc
caggtagaatgtatcgaccgttttggcctgctgccagagccggcgaagaacttaattgaa
gtggctgaaattaaactaaaagcccatgatttaggcattctaaaagtagacttgtcggca
caaggcggtaccatagagttcaaagagaacacgaaggtcaatccgggctatattattagc
cttgtacaaaccaagccgaacaccttcaaatttgaaggcagccaaaaactgcgtttggtg
aaaaagaccgacacagctaaagcgcgaattgcgttcattagcgatattattgccgatttt
gcaaaggagtcgcggtaa
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