Actinomyces massiliensis: QU670_12405
Help
Entry
QU670_12405 CDS
T09278
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amas
Actinomyces massiliensis
Pathway
amas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QU670_12405 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amas03400
]
QU670_12405 (mfd)
Enzymes [BR:
amas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QU670_12405 (mfd)
DNA repair and recombination proteins [BR:
amas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QU670_12405 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WLD71247
LinkDB
All DBs
Position
complement(2897789..2901679)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSTSTWGRARLIIRRRPSRLLAVRLTALLPPLLADPTIDDLVEAAGSRSRTDRTVVVAPG
ARPAVLAAMSLGASGIARATGAAVPHSSDPVDSAPTSRGEGTPLLVVTATGREAEQTAAA
LSCYLPATHVAVFPAWETLPHERLSPRADTVATRLAVLRRLAHPEDGWDTGDRPTGAVPS
GVPDAASSGVPDAASSGAPDPQRGPIRVLVVPVRALLAPVVDGLGELEPVHLAKGLEVGL
ESTAERLAAAAYTRVDMVENRGEFAVRGGILDVFPPTLARPVRVDFFGDEIESVSTFAVA
DQRTIEEIDAVTATACREIVLTDAVRKRARALVDVIPGAADMLGKIAEGINCEGMESLAP
VLVERMVPLLDLVGDRLVVGLEPERLRKRAEDLVATTAEFLAAAWTSAASGGTAPIDLSA
AAFAHLAEARALALSTNRGWWSLSSLASSPDIVELPLRDPKGYRGRLEEAVKDLGALARE
DWSVVVATDGPGPGRRMTQLLADGGVPARIVTQLDEPADLGRTASDGAVSGDGVVRVTQA
SAGHGFIAEGLRLALIAESDLTGRAGAGPRERKAVPARRSRKSVDPLSLHPGDLVVHAQH
GVGRFVELMRRGVGSAKSAANSATREYVVIEYAPSKRGQPGDRLLVPTDSLDQVSKYVGG
DAPALNKMGGADWARTKSKARKAVREIAGELVRLYAARSATTGHAFGPDTPWQAELEEAF
PYTETPDQLATIDDVKHDMEAAQPMDRLICGDVGYGKTEIAVRAAFKAVTEGKQVAVLVP
TTLLVTQHAETFTERYAGFPVRVAQLSRFQSDAESADVLKGLADGTIDVVVGTHRLITGQ
IRFKDLGLVVIDEEQRFGVEHKETLKALRTDVDVLAMSATPIPRTLEMAVTGLREMSTLA
TPPEDRHPILTYVGAYETKQVGAAIRRELLRDGQVFFVHNRVEDIESTAARLAELVPEAR
VATAHGQMSESRLERVIDDFWHKEIDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLH
QLRGRVGRGRERAYAYFLYPADRPLTETSLERLRTIASNTDLGAGMQVAMKDLEIRGAGN
LLGGEQSGHIAGVGFDLYVRMVSEAVAAYKKSLKIGGSAGPETDAEAGIDEDLRIELPVD
ATIPEDYVAHERLRLEAYTKFAAARSESEVADVLEELADRYGPVPEPTRRLASLARLRAL
AAHLGVREIVAQGKSIRFAPVSLPESARMKVTRLYPGTVLKPATRTIVVPAPGTARMGGG
PIEGEDLLRWVEVLLHAVIAGDKDYEVEATKYRRRR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtctacctcgacgtgggggcgggcacggctcatcatcaggcgtcgcccctctagactg
ctcgccgtgcgcctgaccgctcttctgcccccactgctcgccgacccgacgatcgacgac
ctcgtcgaagcggccggcagccgctcccgcaccgaccgcactgttgtcgtcgcaccgggt
gcccgccccgccgttctggcagccatgtcattgggggcgtccggtatcgcccgcgccacg
ggtgccgccgtccctcattcctccgatcccgtggacagcgcccccacaagcaggggcgag
ggcactccactgctcgtcgtcaccgccaccggcagggaggcggagcagaccgccgccgcc
ctgtcctgctacctcccagccacccacgtcgccgtgttccccgcctgggagaccctgccg
cacgaacgcctctccccgcgtgccgacaccgtcgccacgcgcctggcggtcctgcgccgg
ctggcccaccccgaggacggctgggacaccggcgaccgccccactggagctgtgccttcc
ggagtgccggacgctgcgtcttccggagtgccggacgctgcgtcttccggagcgccggac
cctcaacggggccccattcgtgtgctcgtcgtccccgtgcgcgccctcctggcacccgtt
gtggacgggctcggcgagctcgagcccgtccacctcgccaaaggcctggaggtcggcctc
gaatccaccgccgagcgtctggccgcagccgcctacacgcgcgtcgacatggtcgagaac
cgtggtgaattcgcggtccgcggcggcatcctcgacgtcttcccgcccaccctcgcccgc
cccgtgcgcgtcgatttcttcggcgacgagatcgaatccgtctccaccttcgccgtcgcc
gaccagcgcaccatcgaggagatcgacgccgtcaccgccaccgcctgccgcgagatcgtt
ctgaccgacgccgtgcgcaagcgtgcccgcgcactcgtcgacgtcatccccggcgctgcg
gacatgctgggcaagatcgccgagggcatcaactgcgagggcatggagtccctggcccca
gtgctggtcgagcgcatggtcccgctgctcgacctggtcggagaccgcctcgtcgtgggc
ctggagcccgagcgcctgcgcaagcgcgccgaagacctggtggccaccaccgccgagttc
ctcgccgccgcctggacctctgccgcctccggcggcaccgcccccatcgacctgtccgcc
gccgccttcgcccacctcgccgaggctcgcgccctggcactgtcgacgaaccggggctgg
tggtccctgtcctccctcgcctcctcgcccgacatcgtcgagttgccgctgcgcgatccc
aagggctaccgcggccgcctggaggaggccgtcaaggacctgggcgccctggcgcgcgag
gactggagcgtcgtcgtggccaccgacggccccggccccgggcgccgcatgacccagctg
ctcgccgacggcggcgtccccgcgcgcatcgtcactcagctcgacgaacccgccgacctg
ggccgaaccgcttcagacggggccgtcagcggcgacggcgtcgtccgagtcactcaggcc
agtgcggggcacggcttcatcgccgagggactgcgcctggcactcatcgccgaatccgac
ctgaccggtcgggccggagcggggccgcgggagcgcaaggccgtcccagcccgccgctcc
cgcaagagcgtcgatccgctctccctgcaccccggcgatcttgtcgttcacgcccagcac
ggggtcgggcgcttcgtcgagctcatgcgccgcggagtcggatcggccaagagcgcggcc
aactcagcaacccgtgaatacgtcgtcatcgagtacgccccctccaagcggggtcagccc
ggagaccgactcctggtgcccaccgactccctggaccaggtctccaagtacgtcggcgga
gacgcccccgccctgaacaagatgggcggagccgactgggcgcggaccaagtccaaggcc
cgcaaggccgtgcgcgagatcgccggtgagctcgtgcgcctctacgccgcccgctcggcc
accaccgggcacgccttcggacccgacaccccctggcaggccgagctcgaggaggccttc
ccctacaccgagacccccgaccaactggccaccatcgacgacgtcaagcacgacatggag
gccgcccagcccatggaccgcctcatctgcggcgacgtcggctacggcaagaccgagatc
gccgtgcgcgccgccttcaaggccgtgaccgagggcaagcaggtggccgtactcgtgccc
accaccctgctggtgacccagcacgccgagaccttcaccgagcgctacgccggcttcccc
gtgcgcgtcgcccagctctcccgcttccaatccgatgccgaatccgccgacgtgctgaag
gggctggccgacggcaccattgatgtcgtggtgggaacccaccgcctcatcaccggtcag
atccgcttcaaggatctgggcctggtcgtcatcgatgaggagcagcgcttcggggtggag
cacaaggagaccctcaaggcgctgcgcaccgacgtcgacgttctcgccatgtccgccacc
cccatcccgcgcaccctggagatggcggtcaccggcctgcgggagatgtccaccctggcc
accccgcccgaggaccgtcaccccatcctcacctacgtcggcgcctacgagaccaagcag
gtcggcgccgccatccgccgcgagctgttgcgcgacggccaggtcttcttcgtccacaac
cgggtggaggacatcgaatcgaccgccgcccgcctggccgagctcgtgcccgaggcgagg
gtcgccaccgcccatggccagatgagcgagtcgcgtctggagagggtcatcgacgacttc
tggcacaaggagatcgacgtcctggtgtgcaccaccatcgtcgagaccggcttggacgtg
tccaatgccaacaccctcatcgtggaccgggccgaccgcatggggttgtcccagctccac
cagttgcgcgggcgcgtcgggcgcgggcgggagcgcgcctacgcctacttcctctacccc
gccgacaggccgctgaccgagacctcattggagcgactgcgcaccatcgcctccaacacc
gacctgggtgccggcatgcaggtggccatgaaggacctcgagatccgcggcgccgggaat
ctgctgggcggtgagcagtccgggcacatcgccggggtcggcttcgacctgtacgtgcgc
atggtctccgaggccgtggccgcctacaagaagtccctcaagatcggtgggagtgcgggt
cccgagaccgatgccgaggcggggatcgacgaggacctgcgcattgagctgcccgtggac
gccaccattcccgaggattatgtcgcccatgagcggctgcgtttggaggcttacaccaag
ttcgcggccgcccgcagcgagtcggaggtggctgatgtgcttgaggagctcgccgaccgg
tacggacccgttcccgagcccacccggcgtttagcctctttggccaggctgcgtgcgctc
gcggcccacctgggggtgcgcgagatcgtcgcccagggcaagtccattcgcttcgccccg
gtcagcctgcccgagtcggcgcgcatgaaggtcactcgcctctaccccggaaccgtcctg
aagcccgccactcggacgatcgtcgtccctgcgccgggtactgcccgcatgggcggaggg
cctattgagggggaggacctgctgcgctgggtcgaggtgctcctgcacgccgtgatcgct
ggggacaaggactacgaggttgaggccaccaagtaccgacggcggcggtga
DBGET
integrated database retrieval system
