Agromyces marinus: DSM26151_02930
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Entry
DSM26151_02930 CDS
T08161
Symbol
ligD_1
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amau
Agromyces marinus
Pathway
amau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSM26151_02930 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amau03400
]
DSM26151_02930 (ligD_1)
Enzymes [BR:
amau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM26151_02930 (ligD_1)
DNA repair and recombination proteins [BR:
amau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSM26151_02930 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UIP57436
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Position
304797..307271
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AA seq
824 aa
AA seq
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MAQGPAQVVDVDGRRVRLTSLDKVMYPETGMTKGEVIAYYAEIAPVMLPHLAGRPITRKR
WVNGVGTPRHPLDAFFEKHLEEHAPDWIHREVQHHSDGDKTYPVADSRATLVWLAQMGAL
ELHVPQWRFERVAAGATSRADAAGPANPDRMVFDLDPGEGVGLPECAEVARLVRGLLDPI
GLEPVPVTSGSKGLHLYAALDGRQSSDQVSAVAHEVARALEADHPDLIVSSMRKSIRGGR
VLIDWSQNNGRKTTIAPYSLRGRFRPTVAAPRTWAELDDPGLRHLEAGEVLAKLAERADP
MLAVTHASADGPLRTYLSMRSADATPEPMPDSTWGVPNDGDPRFVIQEHHARRLHFDLRL
ERDGVLRSWAVPKGVPESPGTNHLAVQTEDHPMEYLGFAGTIPEGQYGAGSMTVWDTGTY
ETEKWRADEVIVTLHGRVGGPLGRVRVALIRTQGEGEKSQWLLHRMKSQRPAVDPDAMAD
AAPRPVAQAPSRTATRTGTDAARQPSAFPKPMLAAAGTPGLVAGDEWAIEWKWDGVRVIA
RVEDGAVRLVTRTGLDRSKTYPELAALAAAVRADAVLDGEVVALDEHGRPDFGLLQQRMN
LERPREIAAAAASVPVGLRLFDVLEIAGVPTIGEPYDQRRERLERMLRPGVDAPVEVSPR
VDLGADAALERARADGLEGIVAKRRSSPYRPGVRSDDWVKIKVARTQEVVIGGYRPGVGT
RAGRIRSLLVGVPTSAGLRYAGRVGSGLRERDAERLLARLDAIAMVESPFLEVPETDAAD
AVWVEPEIVGEIEFGEWTRTGVARHPRWRGLRPDKRPDEVVEER
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagggtcccgcccaggtggtcgacgtcgacggacgtcgcgtccgcctgaccagc
ctcgacaaggtcatgtaccccgagaccggcatgaccaagggcgaggtgatcgcctactac
gccgagatcgcgcccgtgatgctgccgcacctggcgggtcgcccgatcacgcgcaagcgg
tgggtgaacggggtgggcaccccgcggcatccgctcgatgcgttcttcgagaagcacctc
gaggagcatgcgcccgactggatccaccgcgaggtgcagcaccattccgacggcgacaag
acgtacccggtcgccgacagccgggcgacgctcgtgtggctcgcgcagatgggcgcgctc
gagttgcacgtcccgcagtggcgattcgagcgggtggcggccggcgccacgagccgagcg
gatgccgcgggcccggcgaacccggaccgcatggtgttcgacctcgaccccggggagggc
gtcgggctgcccgagtgcgccgaggtcgcgcgcctcgtccgcggcctgctcgacccgatc
ggactcgaaccggtgccggtcacgagcggaagcaagggcctccacctgtacgcagcgctc
gacggccgtcagagctccgaccaggtctcggccgtggcgcacgaggtcgcccgggcgctc
gaggccgaccatcccgacctcatcgtctcgagcatgcgcaagagcatccggggcgggcgc
gtgctcatcgactggagccagaacaacggcaggaagaccacgatcgcgccgtactcgctg
cgcggccggttccgcccgaccgtcgcggcgccgcggacctgggccgaactcgacgacccg
ggcctgcgccacctcgaggccggcgaggtgctggcgaagctcgccgaacgcgccgacccg
atgctcgccgtgacgcacgcgtcggccgacggcccgctgcgcacctacctgtcgatgcgc
tcggcggatgccacgcccgagcccatgcccgactcgacctggggggtcccgaacgacggc
gacccgcgtttcgtgatccaggagcaccacgcccgcaggctgcacttcgacctgcggctg
gagcgcgacggcgtgctgcgcagttgggcggtgccgaagggcgtgcccgagtcgccgggc
acgaaccacctcgcggtgcagaccgaggaccacccgatggagtacctcggtttcgcgggc
acgatccccgagggccagtacggcgccgggtcgatgaccgtgtgggacaccggaacatac
gagaccgagaagtggcgcgccgacgaggtcatcgtcacgctgcacggtcgcgtcggcggc
ccgctcggccgcgtgcgggtcgcgctcatccgcacgcagggcgagggtgagaagagccag
tggctcctgcaccgcatgaagtcccagcgtccggccgtcgacccggatgcgatggcggat
gccgcgccgcggccggtcgcgcaggccccctcgcgcacggcgacgaggaccggaacggat
gccgcgcggcagccgtccgcgttcccgaagccgatgctcgcggccgccggaaccccgggg
ctcgtcgccggcgacgagtgggcgatcgaatggaagtgggacggcgtgcgcgtcatcgcg
cgcgtcgaggacggcgcggtgcgccttgtcacccggacgggcctggaccgttcgaagacg
tacccggaactggcggcgctcgccgcggcggtgcgcgcggacgcggtcctcgacggcgag
gtcgtcgcactcgacgagcacggccggccggacttcgggctgctccaacagcgcatgaac
ctcgagcgtccgcgtgagatcgccgcggccgcggcatccgtcccggtcgggctgcgcctg
ttcgacgtgctcgagatcgccggggtcccgacgatcggcgaaccgtacgaccagcgtcgc
gaacggctcgaacggatgctgcgaccgggggtcgacgcgcccgtcgaggtgtcgccgcgg
gtcgacctcggcgccgatgcggcgctcgagcgggcgagggccgacggactcgagggcatc
gtcgcgaagcgacgctcctcgccgtaccgaccgggggtccgcagcgacgactgggtcaag
atcaaggtcgcgcgcacccaggaggtggtgatcggcggctaccggccgggcgtcggcacc
cgtgccggccggatccgttcgctcctcgtcggcgtgccgacatccgccggcctgcgctat
gccgggcgggtcgggtcgggcctgcgcgagcgcgacgcggaacgcctgctcgcacggctc
gacgcgatcgccatggtcgagtccccgttcctcgaggtgcccgagacggatgccgccgat
gccgtctgggtcgaacccgagatcgtcggcgagatcgagttcggggagtggacgcggacg
ggggtggcgcgccatccgcgctggcgggggctgcggcccgacaagcgccccgacgaggtg
gtcgaggagcggtga
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