Alteromonas mediterranea DE: MADE_1005250
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Entry
MADE_1005250 CDS
T00747
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
amc
Alteromonas mediterranea DE
Pathway
amc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
MADE_1005250 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amc03400
]
MADE_1005250 (xseA)
Enzymes [BR:
amc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
MADE_1005250 (xseA)
DNA repair and recombination proteins [BR:
amc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
MADE_1005250 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEA97196
UniProt:
F2G262
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All DBs
Position
2955329..2956681
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AA seq
450 aa
AA seq
DB search
MFTNSPSTSRQILTVTKLNRLARTVLEGEIGLIWLSAEISNFVAAASGHWYFTLKDNKAQ
VRAAMFKGANRNVRLRPKEGDKILVRASVGLYEARGDYQLVVEHMESDGEGALKQAFEAL
KFKLNNEGLFDATNKRPLPERINRIGVITSSSGAALHDVLSVLKRRSPQTEVIVYPSMVQ
GEAAPLQLINALRKANQRSEVDVLLLTRGGGSLEDLWCFNDESLAREIAASTLPIVSAVG
HEVDFTISDFVADVRSPTPSAAAEILSQDSTALYQTINQQKQRLARAMNHCIQANKQQLT
LKKQRLDALHPQSRIQSQWQTLDRLQLRLVHAMQRDMSTAEKRVHALNYRLNQQSPAARV
ARAKDKLSYANAKLIATMTALLKNKKSELGGSVTLLQSVSPLSTLARGYSITLTDSTTVN
NVSKVNVGDEIKTRVTDGEITSTVTNIQRQ
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaaattcgccatctacctctcgacaaattttaacagttactaagctaaatcgc
ctcgccagaaccgtactagagggcgaaattggtcttatttggctatctgcagaaatatca
aactttgtggccgccgcttcagggcattggtacttcaccctgaaagacaataaagcgcaa
gttcgcgccgccatgtttaaaggcgctaatcgcaatgtacgccttcgcccaaaagaaggc
gataaaattttagtgcgcgcttcggtaggactatatgaagcccgcggtgactatcaactt
gttgttgagcacatggaaagcgacggtgaaggtgcgcttaagcaagcgtttgaagcatta
aaattcaagcttaataatgaagggctatttgatgcaacgaataagcggccactgcctgaa
cgtataaatcgcattggagtgatcacttcatcaagcggcgcagcgcttcacgatgtctta
agcgtattgaaacgcagaagcccgcaaactgaggttattgtttacccatctatggtacag
ggtgaagccgcaccgcttcagctaattaatgcgctgcgtaaagctaaccaacgttcagag
gtcgacgtgcttctactcaccagaggcggaggctcgctggaagatttatggtgctttaac
gatgaaagcttggccagagaaatagccgccagcacccttcccatcgtgagcgccgttggc
cacgaagtagactttaccattagcgactttgtggctgatgtacgctctcccaccccatct
gctgcggcagaaattttaagtcaagactctacagcgctctatcaaaccataaaccagcag
aagcagcgtttggcccgcgcgatgaaccattgtattcaggcgaataagcaacaactgacc
cttaaaaagcagcgcttagatgctctgcacccgcaaagtcgtatacagtctcagtggcaa
accttagacaggttacagctgcgcttagtacacgcaatgcaaagggatatgtccactgcg
gaaaagcgcgttcatgcgcttaactaccgattaaatcaacaatcgcctgcggcgcgtgta
gcccgagcgaaagacaaacttagttacgcaaacgctaagttgatcgctactatgactgcc
ttgctcaaaaacaagaaaagtgaactcggtggttccgtaacactcttacaatctgtaagc
ccgctctctacgttggctcgaggctacagcattacccttactgatagcactacggttaat
aacgttagcaaggttaatgtaggcgatgagataaaaacacgagtgactgatggcgaaata
accagtacagtgacaaatattcaacggcaatag
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