Aeromonas media: B224_2866
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Entry
B224_2866 CDS
T03075
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amed
Aeromonas media
Pathway
amed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B224_2866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amed03019
]
B224_2866
03009 Ribosome biogenesis [BR:
amed03009
]
B224_2866
Enzymes [BR:
amed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B224_2866
Messenger RNA biogenesis [BR:
amed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B224_2866
Ribosome biogenesis [BR:
amed03009
]
Prokaryotic type
rRNA helicases
B224_2866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AHX61337
LinkDB
All DBs
Position
complement(2254047..2255933)
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AA seq
628 aa
AA seq
DB search
MSDTHTEQMPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGK
TAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGGSSYE
TQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQ
CPATRQVALFSATMPDQIRRVAQKHLKQPKEIKIITKTSTAPTIRQRYWQVTGLHKLDAM
TRLLEVEPYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQL
DILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRM
LRAIEHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMGEELEIYVNLVNELIEEDSA
DPLELAAALAKLVQGDQPLLLDDSVTEPASDRAGREFERRDFGDRAPRDFGDRGDRPARR
MPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDIADDFS
TVDLPKGMTADVLEVIKKARVCQRPLMITRYTEVPAGSNTAPRPPRSDRPFNKDRRPSGD
RPFNKSGERREGGFNKDRKFGGNKRRDS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacccataccgaacaaatgcccctttttagtgagcttggactggccgcgcct
gtattgaaagcgctgcaagacgtgggctatgagcgcccgtcaccgatccaggccgcagca
attccccacctgatggcgggacacgatctgctggggcaggcgcaaaccggtacggggaag
accgctgcttttgccttgcctctgttgtctcgtctggaagctggtaaccgtaacacccaa
attttggtgctggcaccgacccgtgagctggcgctgcaagttgccgaggcgtgccaacgt
tacgccaagcacatgcctgacttccatgtcctgcccatctacggtggctcctcttacgaa
acccagacccgcgccctgcgccgtggtgcccaggtggtcgtcggtacccctggccgcgtg
atggatctgatccgtcgcaagaacctggacctctccggcctgaaagccctggtactggac
gaagccgatgaaatgctgcgtatgggcttcatcgacgacgtggactggatcatggaacag
tgcccggccacccgtcaggttgccctgttctctgccaccatgccggaccagatccgtcgt
gttgcccagaaacacctgaagcagccgaaagagatcaagatcatcaccaagacgtccacc
gcaccgaccatccgccagcgctactggcaggtaaccggtctgcacaagctggacgccatg
acccgtctgctggaagtcgagccgtacgaagccgtactggtcttcgtgcgcaccaagaac
gccgccgaagagctggcgggcaagctggccgcccgtggtcacgcctgtgaagcgctgcac
ggtgacattccgcagaagctgcgtgagcgtaccgtcgacaagctgcgtcaaggccagctg
gacatcctgatcgccaccgacgtcgtcgcccgtggtctggacgtcgagcgcatcacccac
gtggtgaactacgacattccgtacgataccgaatcctacgttcaccgtatcggccgtacc
ggccgtgccggtcgcaagggcgaggccatcctgtttgtggctccccgcgagcgccgcatg
ctgcgcgccatcgagcacgccactcgtcaggccatcgagccgatgaagatgccgagcacc
gaggacatcaaccagcaccgcatgaccaagttcaaggagcgcatccgggaaaccatgatg
ggcgaagagcttgagatctacgtgaacctggtgaacgagctgatcgaagaagattctgcc
gatccgctggagctggctgccgccctggccaagctggtgcagggtgaccaaccgctgctg
ctggatgactccgtcactgaaccggcaagcgaccgtgctggccgtgagttcgagcgccgt
gacttcggtgatcgtgctccccgtgatttcggtgaccgtggcgatcgtcctgcccgtcgc
atgccgtccctcgagccgcgtccgctgaaagacaatcctgacgtggagatggagcgttac
cgcgtagacgtgggtgcccatcacggtgtcaagccgggccagatcgtcggcgccatcgcc
aacgaagcgaacatcgagagccgtttcatcggcaacatcgacatcgccgatgacttctcc
accgtcgacctgcccaagggcatgactgccgacgtgctggaagtgatcaagaaggcccgt
gtctgtcagcgtccgctgatgatcacccgctacaccgaagtgccggccggcagcaacact
gctccccgtcctccgcgcagcgatcgtcccttcaacaaggatcgccgccccagcggtgac
cgtccgttcaacaagagcggggagcgccgtgaaggtggtttcaacaaagatcgcaagttc
ggtggcaacaagcgccgcgacagctga
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