Astyanax mexicanus (Mexican tetra): 103022784
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Entry
103022784 CDS
T05042
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103022784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amex03009
]
103022784
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
Pre-60S particles
RNases
103022784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
HBD
Motif
Other DBs
NCBI-GeneID:
103022784
NCBI-ProteinID:
XP_022540717
LinkDB
All DBs
Position
25:complement(2921880..2949485)
Genome browser
AA seq
1278 aa
AA seq
DB search
MFPSAALLADIACPLFSGGCCERPYCLYKHTKEDSSGLAEAATGHGALHNQEESNTCLLE
LEKINKQIEAVRNEVEKEQKRLFRYQSEQTEITRASADTAEQYVKSKPTVSKDLNGNRVK
SKKTAAAPHSHPSAQKYVVDRSRPKTDLEYDPCSNFSSDLRSSSSKDKNKSTSKMEVEIH
QRAKGKGKNVVADPDPVHLPSCSLKDSDDEGTLIIDVPPQENNRKNSRPQKWSMVTSEGG
TSMEKELGSRRLSRKCNDIKKITEEPSETECLEVASLDKDGVKLRSTKENTSRTVLDSPE
RNLVIDIPHQLTNHSNKPVKPKLSRLQREEVSSGGIPHLEIGPSEDKKKPLNQCKSMVQE
ASGTPSTKRLVGKGLENDQKSFNQSSTNAKNGKTKEENSKQAISPMVEKKNAGHSSKANI
LEHLPANSLPPGGHEEKAQTIENGNALDNISLCLDHLRSESENITCFPMVEDFILDNFPS
TANSSKVGVDPFSQPTKHGVQGLNVGRTELEVKQNCLSGSVQKADPLPLKYHQVQQVSQE
MVFQDYFPSTTPFPSMIKEPVAGQKSLTPVEACWLPPQKVLPQPVVQNMPVYISGPDPAC
APSTQSVKLHNPAAASSVNLASIPIQKKPPSTVTSGITAGITCGTGGPAQTSSPALMAAA
NQVIEIGSSSSEELNYSDLDLSDTDPMEECYRIFMEANGAENPTAQDGVPEEVPKMAETE
ASANPPPVQKKRVAHVAKFEQVSKSKAQVIVPLRDGGSQLPVPTRSQQCQKRAAALTAAV
KGCQQVIAASVPRKVFAPTIIQPSPVQSAYVNILPVGTTLRLGSNLHLIVPDGNCALPVT
LIPATLPVTRPLHQPAQNLQPAQPANYTPAKSIPTKRKAKVRDVGVKVPHDVRQRYVNLF
VEEFLKTSATVQDAFEKALAEEKTVFDRSINKLKYLSVAVNALKRLKNQNAAPAKFSSER
DAQACRGNVPLNTQALLGNGDLALYDQLKEHILTEAMLRENNYPRRHPDKAGAAVQYGGE
AKKGAGDGSRRICCRCGTSFSVSQTGKHTRKEECNYHYGKVIENRVPGGVETRYSCCENA
VGAPGCQVFKLHVHDAVSLQSFVSSLPQTCTECPGIYSIDTVMCYTTQGLELVRVTVVNS
SLQVIYDTFVQPNNEVIDYNTRFSGVSEDDVKGSSSSLRDVQAVLLSFISADTILVGHGL
ENDLCALKLLHSTVVDTSVVFPHRLGPPHKRELHSLTAEYLRRIIQESAEGHDSSEDAVA
CMELMLWKVKEDAKGKRW
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgttcccttctgctgcactcttggctgatatagcgtgcccccttttctctggggggtgc
tgtgaacgaccctactgtttgtacaagcacaccaaagaggactcttcaggcctggctgaa
gctgctacaggtcatggagctcttcacaaccaagaggagagcaacacttgtcttctggag
ttggaaaagatcaacaaacagattgaagcagtcagaaatgaagtggagaaagaacaaaag
agacttttccgctaccagtcagagcaaactgagatcactcgtgcttccgcagacactgca
gagcagtatgtaaagtccaaacccactgtttccaaagacctgaatggaaaccgcgttaag
agtaaaaagactgctgccgctcctcattctcacccctctgctcagaaatatgtggttgat
cgcagcagacccaaaaccgatctggaatatgacccttgttccaatttctcctctgatctg
agatctagcagctcaaaagataaaaacaaatcaaccagtaaaatggaagtggagattcat
caaagggctaaaggaaagggaaagaatgtggttgcggatccagatccggtccatctgccg
tcttgtagtttgaaggattctgatgatgaaggaacacttatcattgatgttccacctcaa
gaaaataatagaaagaacagcagacctcagaaatggagcatggttaccagtgaaggtggt
acatccatggaaaaagaactgggaagtagaaggctttcaaggaaatgcaatgacatcaaa
aagatcacagaagagccttcagaaactgagtgccttgaagtggcatctctggacaaagat
ggagtgaagttgaggtctacaaaggaaaacacatctaggacagtgttggattcacctgag
agaaatcttgtcattgatattccacaccaactaaccaatcacagcaataaaccagtaaag
ccaaagttatccaggctgcaaagggaagaggtttcttctggaggaataccacatcttgaa
attggaccctctgaagataagaagaaacctttaaatcaatgcaaatcaatggttcaggaa
gcttctggtaccccttcaaccaaaagactggttgggaaaggtttggaaaatgaccaaaag
agcttcaatcaaagctcaacaaacgccaagaatggcaaaaccaaagaggagaactcaaag
caagcaatttctccaatggttgagaagaaaaatgcagggcattcctcaaaagcaaatatt
ctagagcatcttcctgccaacagtttgcctcctggtggccatgaagaaaaagctcaaacc
attgaaaatggcaatgccctagataacatttctctatgcctggaccacctgagaagcgaa
agtgagaacatcacttgctttccaatggttgaggacttcattcttgacaacttcccttcc
acagccaattcctctaaggtgggtgtagatccattttcccaacctaccaaacatggagtc
caaggtctgaacgttgggcgaactgaacttgaggtaaaacagaactgtctctcgggttct
gttcaaaaagcagaccccttgcccctcaagtaccatcaagtacagcaggtctctcaggag
atggtatttcaggactacttcccttccacaacacctttcccatccatgattaaagaacca
gtggctggtcagaagtctctgacccctgtggaagcgtgttggctacctccacaaaaagtt
ctcccacaacctgttgttcagaacatgcctgtatatatttctggacctgaccctgcatgt
gctccatcaacacaatcagtgaagttgcataacccagcagctgcatcgtcagtaaattta
gcttccattccaattcagaagaaaccaccttcgactgttacctccggcatcaccgctgga
atcacctgtggtacaggtggtcctgcacagacctcttcacctgctttaatggctgcagca
aatcaagtcatagaaattgggtctagttcctcagaggagctcaattactcagacctagac
ctttcagacactgatccgatggaagagtgctacaggatctttatggaagctaatggtgct
gaaaatcccactgcgcaagatggtgtgccagaggaggttccaaagatggccgagaccgag
gcatcggccaatccaccacctgttcagaagaaaagagtcgcccatgtagcgaagtttgag
caggtcagtaagagcaaagcgcaggttatcgtgcctcttcgagatggaggctcgcagcta
cctgttccaacccggagtcagcagtgccagaagagagcagcagcgctcacagcagcagtg
aaaggatgccagcaagttattgcagccagtgtgcccaggaaagtctttgcacctactatt
atccagcccagtcctgtacaaagcgcctatgtgaacatcctcccggttggcacaacccta
cggctgggctcaaaccttcacctgatcgtccctgacgggaactgtgctttaccggtcacg
ctaattcctgctactctgcctgtaacacgtcctcttcatcaacctgctcagaatcttcag
ccggcacaacctgccaactacacacctgctaagtcaattcctaccaagcgcaaagcgaaa
gtacgggatgttggagtgaaggttccacatgatgtgcggcagcgctacgtcaacctgttt
gtggaggagttcctgaaaacatcagccactgtgcaggatgccttcgagaaggctctggca
gaagagaagacagtgtttgaccgcagcatcaataaattaaagtatctaagcgtagcagtc
aatgcgctcaagaggcttaaaaatcagaacgcggcccctgccaaattttccagtgagcgg
gatgcgcaggcatgcagaggaaatgtgccactcaatactcaagcactcctgggaaacggt
gaccttgcactgtatgatcagctgaaggagcacattctgactgaggccatgctgagggag
aacaactaccctcgcagacacccggacaaagctggtgctgctgttcagtatggaggagag
gcaaagaagggagctggagatggttccagaaggatctgctgccgctgtggaacttctttc
tcggttagccagactggaaaacacactcgtaaagaggagtgtaattaccattacgggaag
gtcatagaaaaccgagtaccaggtggagtagagacgcgttacagctgctgtgagaacgct
gtgggggcgcctggatgtcaagtgtttaagctccatgttcacgatgctgtaagtctccag
agctttgtgagcagcctcccgcagacctgtactgaatgcccagggatttactctatcgat
actgtgatgtgctacaccacccagggcctggagctggtgagagtcaccgtggtcaacagc
agtctacaggtcatctacgacacatttgttcagcccaacaatgaggtcattgactacaac
accaggttctccggggtcagcgaggatgatgtgaagggcagcagctcatctttacgagac
gttcaggctgtgcttttgagcttcatcagcgccgacaccatccttgttgggcatggtttg
gaaaatgacctctgtgctctgaaacttcttcacagcacagtagttgacacatccgtggtg
tttccccaccggctgggaccgccgcacaagagagagctccacagcctgactgcagagtac
ctaaggaggataatccaggagagcgcggagggccatgactccagcgaagacgctgttgcc
tgtatggagctgatgctgtggaaggtgaaggaggatgctaaggggaagaggtggtga
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