Astyanax mexicanus (Mexican tetra): 103035285
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Entry
103035285 CDS
T05042
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03030
DNA replication
amex03410
Base excision repair
amex03420
Nucleotide excision repair
amex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103035285 (lig1)
03410 Base excision repair
103035285 (lig1)
03420 Nucleotide excision repair
103035285 (lig1)
03430 Mismatch repair
103035285 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amex03032
]
103035285 (lig1)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103035285 (lig1)
Enzymes [BR:
amex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103035285 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
103035285 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103035285 (lig1)
DNA replication proteins [BR:
amex03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103035285 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103035285 (lig1)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103035285 (lig1)
NER (nucleotide excision repair)
Other NER factors
103035285 (lig1)
MMR (mismatch excision repair)
Other MMR factors
103035285 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
103035285
NCBI-ProteinID:
XP_022521263
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MQRSIASFFQPMKCKEKKDEPAKVKSEPIKSPLKTQNGERDCDSPVKKTSKRARAIIDSD
DEEQPTVKNEVSKQEEEQATKPDKEKADVKVSASPLSPKPLATPTTPATPATPALSAASG
TPGTPATPNSTSPSGIPKRRTARKHFPKRKLDSRSDGEKEKEEAEEDGKKKEEQQESKRA
RIEESADQTENEGEEMEVEDKTVNGESAAEDQKSNDEEKMDEGETNDTNEESKKSDDEKV
KKEKKEGRKEKNKMKVNTVKEEKNSPERVKKEQKNGEEEKKEGSAKKKPISSFFAPRKAA
VKLEKSEEKNDGEKKKDEGKSSPVSEEKGKKSEKGAEPANQSQYDPSKAHYHPIDDACWK
KGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVILLSPDDLLCCVYLCLNQLGPAY
QGLELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPASLNAA
GVFNKLKEIGNMSGNSAMNKKIDIIKGLFVACRFSEARFIVRSLAGKLRIGLAEQSVLAA
LSQAVCLTPPGQEFPPSVIDAGKGMSTESRRAWLEEKALILKQTYCEMPNYDVIIPVLVK
EGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENG
EVRIFSRNQEDNTSKYPDIISRIPQVKKESVRCCVLDTEAVAWDREKKQIQPFQVLTTRK
RKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSRRRALLKESFVEKEGEFVFARSLDSD
NTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTMDLCVI
GAYLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRP
YYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDSEKGISLRFPRFLHIREDK
KPEDATTGAQIADLYKKQQQIQNQGEKADLEDYY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtagcatcgcgtcttttttccagccgatgaaatgtaaggagaagaaagacgaa
ccagctaaagtgaagtctgaaccaatcaaaagcccactgaaaactcagaatggtgagaga
gactgtgattctcctgtaaagaagacaagcaaacgagctcgagcgatcatcgacagtgat
gatgaagaacagccgacagtaaagaacgaggtctccaagcaggaggaagaacaagctacc
aagccggacaaggagaaggccgatgttaaagtcagtgccagtccactttcaccaaagccc
ctcgctaccccaacaacccctgccacgccggcaactccagcattatctgcagcttcaggc
acacctggaactcctgctactccaaattccacctcaccctctggaattccaaaacgcagg
actgctcgtaagcatttccccaagaggaagttggacagcaggagtgatggagaaaaggag
aaagaggaggccgaagaggatggaaagaagaaagaagaacagcaggagagtaaaagagca
aggatagaggagtctgctgatcagacagagaatgaaggagaggaaatggaagtggaagat
aagaccgtaaatggtgagagtgcggcagaagatcagaaatcaaatgatgaggaaaagatg
gatgaaggagaaactaatgacacaaatgaagagtccaagaaatcggatgatgaaaaggtt
aaaaaagaaaaaaaggagggaaggaaggagaagaataaaatgaaagtgaatacagtcaag
gaggaaaaaaacagtcccgaaagagttaagaaagaacagaagaatggagaggaggagaag
aaagagggatctgctaagaaaaaacccatcagcagtttttttgcccccagaaaggctgca
gtaaagctggaaaaatcagaagaaaaaaatgatggtgagaaaaagaaggacgaagggaag
agttcgcccgtctctgaggagaaagggaagaaaagtgaaaagggggcggagcctgcaaac
cagagccagtatgatccttctaaagctcattaccatcccattgatgatgcgtgctggaag
aagggacagaaagttccgtatctggctgttgctcgtacctttgagaagattgaggaagat
tccggcaggttgaggaacatcgagacgctgtccaacctgctgcgatccgtcatcctcctc
tctccagatgatctgctgtgctgtgtgtacctgtgcctgaatcagcttggtccagcctac
caggggctggagctgggtgttggagagacggtgctgatgaaggctgttgcccaggcaacc
gggcgacagctggacaaaatcaaggcagaggcccaggagaaaggcgacctgggattggtg
gccgagagttcccgcagcaaccagcggatgatgtttgctccagccagtctgaatgcagca
ggagtcttcaacaaactgaaggaaatcgggaacatgagcggcaactctgctatgaataag
aaaattgacatcattaagggtctgtttgtggcttgtcgtttctcagaggccagattcatt
gtacggtcgttggcagggaagctgaggatcggattggctgagcagagtgtgctggcagct
ctgagtcaggctgtgtgtctgaccccaccaggtcaagagttcccgccgagtgtgattgat
gctgggaaggggatgagcacagagagccggagggcgtggctggaggagaaggcactcatt
cttaaacagacttactgtgaaatgccaaattatgatgtcatcatccctgtcctggtaaag
gagggaatagaccagctgcccaagcactgcaaactgactccaggtgtgcccttgagaccc
atgttggctcaccccactaaaggagtcggggaggtgatgaagaggtttgatgaggctgct
ttcacctgcgagtacaagtatgatggagagagagcacagatccatattcttgaaaatgga
gaggttcggattttcagcagaaatcaagaagacaataccagcaaataccccgatattatc
tcacgcatcccacaggtaaagaaggagtcggtgcgttgctgtgtgttggacacggaggct
gttgcgtgggacagagagaaaaaacagatccagcctttccaggtcctcactacgcgcaag
aggaaggatgtagatgcgtctgagataaaggtgcaggtgtgtgtgtacgccttcgacctg
ctgtacctgaacggagagtctctggtgcgggagccgctgagtaggcgccgcgctctgctg
aaggagagttttgtggagaaggagggagagtttgtcttcgctcgttctctcgactctgac
aacactgacaccatcgctgagttcctggagcagtctgtacgagactcttgtgaaggctta
atggtgaaaaccctggagaaagacgccacttacgaaatcgccaagcgctcccacaactgg
cttaagctgaagaaggattatctggagggcgtgggggacactatggatctgtgtgtgatc
ggggcctacctggggaaaggcaagagggcgggcagctatggaggattcttgctggcctgc
tatgatgaggagaacgaggagtttcagtcagtttgtaagattggaacaggattcaaggat
gaagatctggagcaacattacaatttcttaaaggagcacatcctccctaagccccggccg
tattaccgggtggatcagtcagcagaacccgatgtgtggctggatgcagtgcaggtgtgg
gaggtgaaatgtgctgacctctcgctgtctccagtctacaaggcggcaatgggcttggtg
gactcagagaaaggaatttctctacgcttcccacgattcctccacatcagagaagacaag
aagccagaggatgccactactggagcacagattgctgatctctataagaagcagcagcag
attcaaaatcaaggggaaaaggcagatctggaggattattactga
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integrated database retrieval system
