Alteromonas macleodii English Channel 673: AMEC673_07565
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Entry
AMEC673_07565 CDS
T02254
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMEC673_07565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amg03400
]
AMEC673_07565
Enzymes [BR:
amg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMEC673_07565
DNA repair and recombination proteins [BR:
amg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMEC673_07565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
RecG_dom3_C
SecA_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFT74207
LinkDB
All DBs
Position
complement(1781996..1785493)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATLLSLPLPAPKKEASSQDHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMK
LEKEIAFFLSDNTKHTPITLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVP
VNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSII
DLFPMGSDQPFRIDLFDDEIDSIRYFDTETQRSGEAVNEIRLLPAREFPTDKEAITLFRQ
QFLEKFDANNASESVFSQVSKGTMPSGVEYYLPLFFEKTATLFDYLHPKSLLLLHGDVQD
ASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLSSKVLEEKSGT
SNLQCEKLDDIAINSQKKVPAERLIKTVNQATDNGAKVLFCAETQGRREGLLTVLAKAGI
KPKIVDSFSDFIASHDSIGITVGMVDNSFRWQTQEGELLFITETELLGQKVSQRRLRDKR
TATDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVATEYLCIEYAKQSKLYVP
VASLHLISRYTGGDADSAPVSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFA
YKINWDDYQAFSDSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAA
FLAANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEG
KVDIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRT
LNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAFMREILRGGQVYFLHNEVDSI
ARTAEEIAEIVPEARIAVGHGQMRERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANT
IIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAG
FALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDKAVNALKEGREPSLDDATSGHT
EVELRIPALLPEDYIADVNTRLSLYKRLASCTSQDDIDEFQVECIDRFGLLPEPAKNLIE
VAEIKLKAQALGILKVDLSAQGGTIEFKETTKVNPGYIISLVQTKPNTFKFEGSQKLRLV
KKTETAKERIAFISDIIADFAKESR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacagccactttattatcgcttccattacctgcgcctaaaaaagaagcctcatcacaa
gatcacaaacactggggccaacttcaaggcagcagtgccgcactatgtatcagccaagca
ctcagccaatacaaaggccctattgtactgattaccgccgatacaccgtcggcaatgaag
ctcgaaaaagaaatagccttcttcttaagcgataatacaaagcatacacctattactctg
tttccagattgggaaacactgccctacgattcgttttcgccccatcaagacattgtttct
cagcgattagaaaccctattccgctttacacagcaaggcgaaggcatattcatagtgcct
gttaacacgttaatgcagcgtttagcccctaccgattatttagcaaagtatttgcttatg
ctaaacaagggcgacaccttagatagagatcagttcagacgcaatctcgagcaagccggc
tacctgcatgttagtcaggtaatgagccacagcgaattctcggtgcgcggcagcatcatc
gacctttttccgatgggaagcgaccagccatttcgaatagacttgtttgatgacgaaatc
gactccattcgctatttcgatactgaaacccaacgctctggcgaggctgttaacgaaatt
cgcttgctaccagcacgagaatttcctacagacaaagaggcaatcacgcttttccgccag
cagtttttagaaaagttcgacgcaaacaatgcatctgaaagcgtattttctcaggtaagc
aagggcaccatgccgagcggtgtggaatattatcttcccctcttctttgaaaaaaccgct
acgctttttgactatcttcaccctaaaagcctgttattacttcacggtgatgtgcaagac
gccagcgagtttttctgggccgacgtacaagaacgttacgagcagtatcgttataactta
gcccgtccactgcttgcaccagacgagctgtttttacctataaatgagctatttggtgcc
ataaaacagtggccacgtgcatccctttctagcaaggtgcttgaagaaaaatcaggtact
agcaaccttcagtgcgaaaagcttgatgatattgcgattaactcgcagaaaaaagtacct
gctgaaagactcattaaaacggtaaatcaagccactgacaacggggctaaagtactgttt
tgtgctgaaacccaaggtcgccgagagggcttgcttacggtacttgccaaagcgggcatc
aagccaaagattgttgatagctttagcgatttcatcgcaagtcacgacagcattggcatt
accgtgggtatggttgataacagtttccgctggcaaactcaggaaggcgagctgttattc
attaccgaaaccgaactattagggcaaaaggtaagccagcgccgccttcgcgataaacgc
actgccaccgacgaaagcgccattatccgtaacctggccgaactttctattggtcagcct
gtggtgcacctcgatcacggtgttggccgttatttgggccttcaaacgttggacgcgggc
ggcgtagcaaccgaatatttgtgcattgagtatgccaagcaatctaagctttacgtgcct
gtggcgtcgcttcacttgatttcacgctacactggtggcgatgccgacagcgcaccagtt
agcgccttgggctcagacgcatggacaaaagccaagcaaaaagccgccgaaaaagttcgt
gacgtagcggctgagcttttagatgtatatgcccgccgcgcagccaagccaggttttgcc
tacaaaataaattgggacgactaccaagccttctcagacagcttcccctttgaagaaaca
cccgaccaagcccaagccatcgctgcggttatgcacgacatgggcagtccatcggctatg
gatcgcctagtttgcggtgacgtaggtttcggtaaaaccgaagttgctatgcgcgcggca
ttccttgcagctaatgctggtaaacaggtggctattttggtgcccactaccctactggct
cagcaacattacgagaactttaaagaccgtttcgcggcatggccgtttgaaattgaagtc
atgagccgttttgtaagcggtaaagcgcaaaaatctgtggttgagcggatcggcgaaggc
aaagtagatatcgtagtaggcacacataaactgctgtctagcgatattaaatataaagac
ttaggccttgtgatcatcgacgaagaacatcgctttggcgtgcgtcaaaaagagaaactt
aagtcattacgtgccgacgttgatatccttacccttacggcaacgcctattcctcgtacg
cttaacatggcgttatcaggcatgcgcgacttatcgattattgccacagccccggcccgt
cgtttatcaattaagacctttgtgcagcagcgtaataaagccgttattcgcgaggccttt
atgcgtgagatattgcgtggtggtcaggtttacttccttcacaacgaagtagatagcatt
gcgcgaacggctgaagaaatcgcagaaattgttcccgaagcccgtattgcagtggggcac
ggccaaatgcgcgagcgtgaacttgaaggcgtaatgagcgacttctatcatcagcgctac
aacgtacttgtgtgtactaccatcattgaaacaggtatcgacgtaccaagtgcgaatacc
attattatggatagagccgatcatttaggtttagcgcagcttcaccagcttcgtggccgt
gtaggtcgttcgcatcatcaagcgtacgcatacttattaacgcctcatccaaagcgcatg
accaaagatgcagtgaaacgattagaagcaatatcacagcttgaagatttaggtgcaggt
tttgcgcttgctacccacgatttagaaattcgtggtgccggtgagttgttaggcgacgac
caatcggggcaaatagcgagtattggtttcagtttgtacatggatatgctcgataaagcc
gttaacgcgcttaaagaaggccgagagccttcgttagacgacgcgacctcgggccatacc
gaagttgaactgcgtattccagccctattgcctgaagactatattgccgacgttaacact
cgcctatcgctatataaacgtctggcaagctgtacgtcccaagacgacattgatgaattc
caggtagaatgtattgaccgctttggtctattgccagagcctgccaaaaacttgatagaa
gtggctgaaattaaactaaaagcccaagcgttaggcattctaaaagtagacttgtcggcc
caaggcggtaccatagagtttaaagaaaccactaaggttaacccaggctatattattagt
ttggtgcaaaccaaaccaaacacctttaagtttgaaggaagccaaaaactgcgtttggtg
aaaaagaccgaaacagctaaagagcgcatcgcgtttattagcgatattattgccgatttt
gcaaaggagtcgcggtaa
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