Actinosynnema mirum: Amir_0665
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Entry
Amir_0665 CDS
T00957
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ami
Actinosynnema mirum
Pathway
ami03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Amir_0665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_0665
Enzymes [BR:
ami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Amir_0665
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Amir_0665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACU34628
UniProt:
C6WJJ6
LinkDB
All DBs
Position
734160..737723
Genome browser
AA seq
1187 aa
AA seq
DB search
MSQPGPLSGLLTAVLPDKALRALADAAGSPELELEGPPAARPLVAAALSRTSPVLAVTAT
GREAEELASVLRDLVGPEAVAIFPSWETLPHERLSPRADTVGARLQVLRRLAHPGDRPLR
AVVATVRSLIQPMAPGLGDLEPLDLATGSEHDFDALLHRLAELAYTRVDMVEKRGEFAVR
GGILDVFPPTAEHPLRVEFWGDEVTEIRPFSVADQRSLPKQVDAFTAPPCRELLLTERVR
ARAQELAAEHEADAQLAEMLTKLAEGIPSEGMEALIPALCDGELQLLTDLVPDGTHVLVN
DPEKIRARARDLVRTGQEFLEASWMAAAGGGKAPIDLGASAYRSLDEVADAARAADKPWW
TLSQLTTEGSDVLRLEFKHVHAYQGDVDRAFADLRAHTAAGGTAVLVVPGTGTAQRATEQ
LREAQVGAVCVDSLDEPPRTGAVTVVRGALEDGFALPELALVVLTETDLTGGRGGTSTKD
MRRMPSRRRNAVDPLALRTGDYVVHEQHGIGRYVEMVQRTVAGATREYLVLEYASSKRGQ
PGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKQIAAELVQLYAARQ
SAPGHAFAPDTPWQRELEDAFPFTETVDQMAAIDEVKADMERGVPMDRVICGDVGYGKTE
IAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFTERMRAFPVVVRGLSRFTDPTEAEQTT
TGLAEGDVDVVIGTHRLLQKGLRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSA
TPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGGYADKQVGAAIRRELLRDGQVFYVH
NRVSSIEKAARRIRELAPEARVVTAHGQMNEDKLEKIIQGFWEREYDVLVSTTIVETGLD
ISNANTLIVERGDLLGLSQLHQLRGRVGRGRERGYAYFLYPPESPLSETAHDRLATIAQN
TELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRSAGADGEL
EVEPAEVRVELPVDAHIPHDYVPGERLRLEAYRKIAAAVDEAGLTAVRDELKDRYGAPPL
PVERLLDVARLRHTCRAHGVTEVALQGSSIRFAPLELKDSQVVRLRRLHPKAVYKQAVST
ITTPRPTEGAAGGRMGAPPLRDQELLAWCAHFLESLAGAPVSGVTSS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcccggcccgctgtccggcctgctgaccgccgtcctgcccgacaaggccctg
cgcgccctggccgacgccgcgggttcccccgagctggagctggagggaccgcccgcggcc
cggcccctggtggccgccgcgctctcgcgcacctccccggtgctcgccgtgaccgccacc
gggcgggaggccgaggagctggcctcggtcctgcgcgacctggtcggacccgaggcggtg
gcgatcttcccgtcctgggagaccctgccgcacgagcggctgtcccccagggccgacacg
gtcggcgcccgcctccaggtgctgcgcaggctcgcccaccccggcgaccggccgctgcgc
gcggtcgtggccacggtccgcagcctcatccagcccatggcccccggcctcggcgacctg
gagccgctcgacctcgccaccggctccgagcacgacttcgacgccctcctgcaccggctg
gccgagctggcctacacccgcgtcgacatggtcgagaagcgcggcgagttcgccgtgcgc
ggcggcatcctggacgtcttcccgcccaccgccgagcacccgctgcgcgtggagttctgg
ggcgacgaggtcaccgagatccgcccgttctcggtggccgaccagcgctccctgcccaag
caggtcgacgcgttcaccgccccgccgtgccgcgagctgctgctcaccgagcgggtccgc
gcccgcgcccaggagctggccgccgagcacgaggccgacgcgcagctcgccgagatgctc
accaagctcgccgagggcatcccgtcggagggcatggaggcgctgatccccgccctgtgc
gatggcgagctccagctgctcaccgacctggtcccggacggcacgcacgtgctggtcaac
gacccggagaagatccgggcccgtgcccgcgacctggtccgcaccggccaggagttcctg
gaggcctcctggatggcggcggcgggcggcggcaaggccccgatcgacctcggcgcctcc
gcctaccgctcgctcgacgaggtcgccgacgccgcgcgcgccgccgacaagccctggtgg
acgctcagccagctcaccaccgagggctcggacgtgctgcgcctggagttcaagcacgtc
cacgcctaccagggcgacgtggaccgggcgttcgccgacctgcgcgcccacaccgccgcg
ggcggcaccgccgtcctggtcgtgcccggcacgggcaccgcccagcgcgccaccgagcag
ctgcgcgaggcccaggtcggcgcggtgtgcgtggactcgctggacgagccgccgaggacc
ggcgcggtcaccgtggtgcgcggcgcgctggaggacggcttcgcgctgcccgagctggcc
ctggtggtgctcaccgagaccgacctgaccggcggccggggcgggacgtccacgaaggac
atgcggcggatgccgtcccgccgccgcaacgccgtcgacccgctcgccctcaggaccggc
gactacgtggtgcacgagcagcacggcatcggccggtacgtggagatggtgcagcgcacc
gtcgcgggcgccacccgcgagtacctggtgctggagtacgcctccagcaagcgcggccag
cccggcgaccggctgttcgtgcccaccgaccagctcgacgaggtctcccgctacgtcggc
ggcgagctgcccacgctcaacaagctcggcggctcggactggaagaacaccaaggccaag
gccaagaaggcggtcaagcagatcgccgccgagctggtgcagctctacgccgcccggcag
tccgcgcccggccacgcgttcgcgcccgacaccccgtggcagcgcgagctggaggacgcg
ttcccgttcaccgagaccgtcgaccagatggccgccatcgacgaggtcaaggcggacatg
gagcgcggcgtcccgatggaccgggtcatctgcggcgacgtcggctacggcaagaccgag
atcgcggtgcgcgcggcgttcaaggccgtgcaggacggcaagcaggtcgtggtgctggtg
cccacgaccctgctggcgcagcagcacctcaacacgttcaccgagcggatgcgcgcgttc
ccggtcgtggtgcggggcctgtcccggttcaccgacccgaccgaggcagagcagaccacg
acggggctcgccgagggcgacgtcgacgtggtgatcggcacgcaccggctgctgcagaag
ggcctgcggtacaaggacctcggcctggtgatcgtggacgaggagcagcgcttcggcgtc
gagcacaaggagcacatcaaggcgctgcgcacgcacgtggacgtgctgacgatgtccgcg
acgccgatcccgcgcaccctggagatgtcgctggcgggcatccgcgagatgtccacgatc
ctcaccccgcccgaggagcggcacccgatcctgacctacgtcggcggctacgcagacaag
caggtcggcgcggccatccggcgcgagctgctgcgcgacggccaggtgttctacgtgcac
aaccgggtctcctcgatcgagaaggccgcccggcgcatccgcgagctggcgcccgaggcg
cgcgtggtcacggcgcacggccagatgaacgaggacaagctggagaagatcatccagggg
ttctgggagcgcgagtacgacgtcctggtgtccaccacgatcgtcgagaccggcctggac
atctccaacgccaacacgctcatcgtggagcgcggcgacctgctcggcctgtcccagctg
caccagctgcgcgggcgcgtcggccggggccgcgagcgcgggtacgcgtacttcctctac
ccgccggagtccccgctcagcgagaccgcgcacgaccggctcgccaccatcgcgcagaac
accgagctgggcgcgggcatggcggtggccatgaaggacctggagatccggggcgcgggc
aacatcctcggcgccgagcagtccgggcacatcgcgggcgtcggcttcgacctgtacgtg
cggctggtcggcgaggcggtcgaggcgttccgccgctccgcgggggccgacggcgagctg
gaggtcgagcctgccgaggtgcgcgtcgagctgccggtggacgcgcacatcccgcacgac
tacgtgccgggcgagcggctccggctggaggcgtaccgcaagatcgcggcggccgtcgac
gaggcggggctgacggcggtgcgggacgagctcaaggaccgctacggcgcgccgccgctg
cccgtggagcggctgctggacgtggccaggctgcggcacacctgccgcgcgcacggcgtc
accgaggtcgccctgcagggcagctcgatccggttcgcgccgctggagctgaaggactcg
caggtggttcggctgcgcaggctgcaccccaaggcggtctacaagcaggccgtctcgacg
atcacgacgcctcggcccaccgaaggcgcggcgggcggccggatgggcgcgcccccgctg
cgcgaccaggagttgctcgcctggtgcgcccacttcctggaatcactcgcgggagcgccc
gtgagcggtgtcacgagttcgtga
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