KEGG   Aminipila luticellarii: EQM06_02665
Entry
EQM06_02665       CDS       T05806                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amij  Aminipila luticellarii
Pathway
amij03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amij00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EQM06_02665 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amij03400]
    EQM06_02665 (ligD)
Enzymes [BR:amij01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EQM06_02665 (ligD)
DNA repair and recombination proteins [BR:amij03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EQM06_02665 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QAT42219
UniProt: A0A410PTI1
LinkDB
Position
572888..575329
AA seq 813 aa
MEKKLSEYNQKRDFGKTFEPEGKIEDSEEQLKFAVQHHRARRDHYDLRLEWMGVLLSWAV
PKGPTYNTKEKRLAVRVEEHPLEYRNFEGTIPKGQYGGGTVMLWDEGFWEPYGNVSEGLL
KGEMKFVLKGRRLKGKWALIRWKARSDEKSENWLLLKEKDEYANTEDAISEWTTSIRTGR
TMEEIQRGEDEKIKRNPFSKADVQLAKLVQKVPGGEEWLYELKYDGYRILAFVEGNSARL
LTRNGKDYIGRFPDIAASLIDLSAGRAVVLDGEMVITDLSGKTDFQALQNYMKNPRTKNL
TYIVFDILALDGKDLRKEPLIYRKQTLETFMKDAPKNLYYSRYVRGHGKESFDAACQTHM
EGVVGKKADAIYSGTRNGDWIKLKCDKRQEFVIGGYTISDKRVNGISSLLLGVYEGKELI
YAGRAGTGIGEADRKMLEEKFQGLQRTEAPFKLAPEPRAKEKIIWLEPLLAAEIKFAEWT
EEDLLRQASFKGIRTDKDPKEIKREKASEEIMLQSPAAEGEISMETNQDSMIIEGIKISS
PDKVLFNDPVITKAEVIQYYAKISERMMPYVHRRVLSIVRCPKGISQACFFKKHPGAGSK
GVITIPITNSDGETEDYFYIEDTAGLISEVQMGTLEFHTWGSRIDELEKPDMMVFDLDPD
EGMELSRIRQGVRDMRNILSELSLNSYLKTSGGKGYHVVVPLKPVADWDTFHDFAKGVAQ
VMEQKWPDRYTSNVRKAKRSGKIFIDWIRNGRGATSVAPYSIRARKGAGVSMPIAWDELD
TVAPDGIHMPEALSRMSSLDPWEDFFRNDQRLK
NT seq 2442 nt   +upstreamnt  +downstreamnt
atggagaaaaagctaagcgaatataaccagaaaagagacttcggaaaaacctttgaacca
gaaggaaaaatagaagattccgaagaacagctgaaatttgcggtacagcatcacagagca
cggcgggatcactatgatttgagactagagtggatgggggttcttttgagctgggcggtg
cccaagggacccacttataacacgaaggaaaagcggctcgccgttcgggtggaggaacat
ccgctggaatacaggaattttgaggggactattcccaaggggcaatacggcggcggtacg
gtcatgctttgggacgaaggattttgggagccttacggaaatgtatcggaaggactcctc
aaaggtgagatgaagtttgtgttgaagggaagacgcttgaaaggaaagtgggccttgatc
cgctggaaagcaagatccgatgagaaatcggaaaactggcttctactgaaagaaaaagat
gagtacgccaatacggaggatgccatatcagaatggactaccagtatcagaaccgggcgc
accatggaagaaatccaaagaggggaagatgaaaaaataaagagaaatccctttagtaag
gcggatgtgcagcttgccaaattagtgcaaaaggtacccggcggggaagagtggctctat
gaattaaaatatgatgggtatagaatccttgcatttgtggagggcaacagtgcaaggctg
cttacaagaaacggcaaggattatatagggcggtttcctgatatcgcggcatcccttatc
gatctttccgcgggaagagcggtggtgctggacggagaaatggtcatcacagatttatca
ggcaagacagattttcaagccttacagaactatatgaaaaatcccagaactaaaaatttg
acctatatcgtttttgatattctcgcattggacggtaaagacctgcggaaagaaccttta
atctacaggaaacaaacccttgaaactttcatgaaggacgctcctaaaaacctctactac
agccgttatgtcagaggacatggaaaagaaagctttgatgcggcttgccagactcatatg
gaaggagttgtagggaaaaaagcagacgccatttatagtgggacgagaaacggggattgg
atcaagctcaaatgcgataaaaggcaggaattcgtcataggaggatatacaatttccgat
aaaagagtaaacggaataagttctctgctcctcggtgtgtatgaaggaaaagaattgata
tatgcggggcgtgcaggcacaggcatcggtgaggcagacaggaagatgttagaggaaaaa
tttcaaggattacagcggacagaagctcccttcaagcttgcaccggaacccagagcaaag
gaaaagatcatatggcttgaaccgttgttggcagcagaaataaaatttgctgaatggacc
gaagaagacctgttaaggcaggcaagctttaagggaatacggacagataaggatccgaag
gagattaaaagggaaaaggcgagcgaagagataatgcttcaatcgcctgccgcagagggg
gaaatttcaatggaaaccaatcaagacagtatgattattgagggaataaagatcagcagt
ccggacaaggtgctgtttaacgatcccgtcatcacaaaagcagaggtgattcagtattat
gcaaagatttccgagcgcatgatgccgtatgtacatcgcagagtcctcagtattgtacgc
tgccccaaaggaatatctcaggcgtgcttttttaaaaaacatccgggagcaggaagcaaa
ggggtcatcaccatacctattacgaacagcgacggagaaacagaggactatttttatata
gaggatacggccggattaatatcggaagtacagatggggacactggagtttcatacttgg
ggaagccgcattgatgagcttgaaaaaccggacatgatggtgtttgacctggatccggat
gaaggaatggaactgagccggatacgtcagggcgtacgggatatgaggaatattctcagt
gagctttctttaaattcctatcttaagaccagcggcgggaaagggtatcatgtggttgtt
cctttaaagccggtggcagattgggatacatttcatgattttgcaaagggagttgctcag
gttatggagcaaaagtggccggaccgttacaccagcaacgtcagaaaagcgaagcgctcc
ggcaagatttttatcgactggatccgcaatggcagaggtgctacaagcgttgcaccttat
tccataagagccagaaaaggagccggcgtgtccatgcctattgcatgggacgaactggat
acggtggctccggatggcatccatatgccggaagctctttcaaggatgagcagcctggat
ccatgggaagattttttccgcaacgatcaaagacttaaatag

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