Aminipila luticellarii: EQM06_02665
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Entry
EQM06_02665 CDS
T05806
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amij
Aminipila luticellarii
Pathway
amij03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EQM06_02665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amij03400
]
EQM06_02665 (ligD)
Enzymes [BR:
amij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EQM06_02665 (ligD)
DNA repair and recombination proteins [BR:
amij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EQM06_02665 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QAT42219
UniProt:
A0A410PTI1
LinkDB
All DBs
Position
572888..575329
Genome browser
AA seq
813 aa
AA seq
DB search
MEKKLSEYNQKRDFGKTFEPEGKIEDSEEQLKFAVQHHRARRDHYDLRLEWMGVLLSWAV
PKGPTYNTKEKRLAVRVEEHPLEYRNFEGTIPKGQYGGGTVMLWDEGFWEPYGNVSEGLL
KGEMKFVLKGRRLKGKWALIRWKARSDEKSENWLLLKEKDEYANTEDAISEWTTSIRTGR
TMEEIQRGEDEKIKRNPFSKADVQLAKLVQKVPGGEEWLYELKYDGYRILAFVEGNSARL
LTRNGKDYIGRFPDIAASLIDLSAGRAVVLDGEMVITDLSGKTDFQALQNYMKNPRTKNL
TYIVFDILALDGKDLRKEPLIYRKQTLETFMKDAPKNLYYSRYVRGHGKESFDAACQTHM
EGVVGKKADAIYSGTRNGDWIKLKCDKRQEFVIGGYTISDKRVNGISSLLLGVYEGKELI
YAGRAGTGIGEADRKMLEEKFQGLQRTEAPFKLAPEPRAKEKIIWLEPLLAAEIKFAEWT
EEDLLRQASFKGIRTDKDPKEIKREKASEEIMLQSPAAEGEISMETNQDSMIIEGIKISS
PDKVLFNDPVITKAEVIQYYAKISERMMPYVHRRVLSIVRCPKGISQACFFKKHPGAGSK
GVITIPITNSDGETEDYFYIEDTAGLISEVQMGTLEFHTWGSRIDELEKPDMMVFDLDPD
EGMELSRIRQGVRDMRNILSELSLNSYLKTSGGKGYHVVVPLKPVADWDTFHDFAKGVAQ
VMEQKWPDRYTSNVRKAKRSGKIFIDWIRNGRGATSVAPYSIRARKGAGVSMPIAWDELD
TVAPDGIHMPEALSRMSSLDPWEDFFRNDQRLK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaagctaagcgaatataaccagaaaagagacttcggaaaaacctttgaacca
gaaggaaaaatagaagattccgaagaacagctgaaatttgcggtacagcatcacagagca
cggcgggatcactatgatttgagactagagtggatgggggttcttttgagctgggcggtg
cccaagggacccacttataacacgaaggaaaagcggctcgccgttcgggtggaggaacat
ccgctggaatacaggaattttgaggggactattcccaaggggcaatacggcggcggtacg
gtcatgctttgggacgaaggattttgggagccttacggaaatgtatcggaaggactcctc
aaaggtgagatgaagtttgtgttgaagggaagacgcttgaaaggaaagtgggccttgatc
cgctggaaagcaagatccgatgagaaatcggaaaactggcttctactgaaagaaaaagat
gagtacgccaatacggaggatgccatatcagaatggactaccagtatcagaaccgggcgc
accatggaagaaatccaaagaggggaagatgaaaaaataaagagaaatccctttagtaag
gcggatgtgcagcttgccaaattagtgcaaaaggtacccggcggggaagagtggctctat
gaattaaaatatgatgggtatagaatccttgcatttgtggagggcaacagtgcaaggctg
cttacaagaaacggcaaggattatatagggcggtttcctgatatcgcggcatcccttatc
gatctttccgcgggaagagcggtggtgctggacggagaaatggtcatcacagatttatca
ggcaagacagattttcaagccttacagaactatatgaaaaatcccagaactaaaaatttg
acctatatcgtttttgatattctcgcattggacggtaaagacctgcggaaagaaccttta
atctacaggaaacaaacccttgaaactttcatgaaggacgctcctaaaaacctctactac
agccgttatgtcagaggacatggaaaagaaagctttgatgcggcttgccagactcatatg
gaaggagttgtagggaaaaaagcagacgccatttatagtgggacgagaaacggggattgg
atcaagctcaaatgcgataaaaggcaggaattcgtcataggaggatatacaatttccgat
aaaagagtaaacggaataagttctctgctcctcggtgtgtatgaaggaaaagaattgata
tatgcggggcgtgcaggcacaggcatcggtgaggcagacaggaagatgttagaggaaaaa
tttcaaggattacagcggacagaagctcccttcaagcttgcaccggaacccagagcaaag
gaaaagatcatatggcttgaaccgttgttggcagcagaaataaaatttgctgaatggacc
gaagaagacctgttaaggcaggcaagctttaagggaatacggacagataaggatccgaag
gagattaaaagggaaaaggcgagcgaagagataatgcttcaatcgcctgccgcagagggg
gaaatttcaatggaaaccaatcaagacagtatgattattgagggaataaagatcagcagt
ccggacaaggtgctgtttaacgatcccgtcatcacaaaagcagaggtgattcagtattat
gcaaagatttccgagcgcatgatgccgtatgtacatcgcagagtcctcagtattgtacgc
tgccccaaaggaatatctcaggcgtgcttttttaaaaaacatccgggagcaggaagcaaa
ggggtcatcaccatacctattacgaacagcgacggagaaacagaggactatttttatata
gaggatacggccggattaatatcggaagtacagatggggacactggagtttcatacttgg
ggaagccgcattgatgagcttgaaaaaccggacatgatggtgtttgacctggatccggat
gaaggaatggaactgagccggatacgtcagggcgtacgggatatgaggaatattctcagt
gagctttctttaaattcctatcttaagaccagcggcgggaaagggtatcatgtggttgtt
cctttaaagccggtggcagattgggatacatttcatgattttgcaaagggagttgctcag
gttatggagcaaaagtggccggaccgttacaccagcaacgtcagaaaagcgaagcgctcc
ggcaagatttttatcgactggatccgcaatggcagaggtgctacaagcgttgcaccttat
tccataagagccagaaaaggagccggcgtgtccatgcctattgcatgggacgaactggat
acggtggctccggatggcatccatatgccggaagctctttcaaggatgagcagcctggat
ccatgggaagattttttccgcaacgatcaaagacttaaatag
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