Aminipila luticellarii: EQM06_08270
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Entry
EQM06_08270 CDS
T05806
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amij
Aminipila luticellarii
Pathway
amij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQM06_08270 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amij03019
]
EQM06_08270 (rnr)
03016 Transfer RNA biogenesis [BR:
amij03016
]
EQM06_08270 (rnr)
Enzymes [BR:
amij01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EQM06_08270 (rnr)
Messenger RNA biogenesis [BR:
amij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EQM06_08270 (rnr)
Transfer RNA biogenesis [BR:
amij03016
]
Prokaryotic type
tRNA degradation factors
EQM06_08270 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
RNase_II_C_S1
Dfp1_Him1_M
HlyD_3
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QAT43215
UniProt:
A0A410PWB8
LinkDB
All DBs
Position
complement(1778623..1780737)
Genome browser
AA seq
704 aa
AA seq
DB search
MLFKMKLWYTEHMSKIIMDKKKKEKQKSGVPFIKRRSSSHKKEETVQGILLKNKKGFGFV
TPEPSEESPESEKEKQDIFIAGKNLNGAMNGDLVSVVLSAKEKDNRSREGVIDKIISHGV
KEIVGTFEKNKRFGFVVPDDKHFTNEDVFVKKSDWKNAETGDKVVVQITKYPEEGNNAEG
KITEIISRFGETGGDIKALIRQYNLFQTFPSRVNAEAKAVSKVKQQGEEGFEAIREEERK
GRTDLRQKKIITIDGADAKDLDDAISIEKLSNGNYLLGVHIADVSHYVAEDGPMDKEALK
RGTSVYLVDQVIPMLPKALSNGICSLNEGVDRLTLSISMEIDSTGEVVRHDIFKSIIHSA
HRMVYDDVSDMLEKNAVDLISKYDDIYKDILSMKELADILHKRRDLRGSLDFDFDEAYIT
LDDAGIPVTVETAERRIANQIIEEFMLIANETIAEHFYWMEVPFVYRVHEKPAPDRMDEF
KNFVRGFGIAIKGNTENIHPKILSDILKEVKGQSYENVVNTVMLRSMKKAFYDVSCDGHF
GLGVKYYCHFTSPIRRYPDLIIHRIIKEIIDGGVSEKRNKQLRKKADMASDLSSKAERHA
QELEREVEKLKKTEYMSYHIGECFEGVISGITTYGFYVELPNTIEGLVRIESLKDDYYDY
EQAKYRFIGQRTNKIFTLGDKVKIQVLRANVEDREIDFAMAEEK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgctttttaaaatgaaattgtggtatactgaacatatgagtaaaataataatggataaa
aagaaaaaagaaaaacaaaaatccggtgtaccgtttataaagaggcgcagcagttctcat
aaaaaagaagaaacggtgcagggaatcttattaaagaataaaaaaggatttggctttgtc
acgcctgaacccagtgaggaaagtcctgaaagtgaaaaagaaaaacaggatatttttatt
gcgggaaaaaatttaaatggagcgatgaacggtgatctggtgtctgttgtcttgtctgca
aaagaaaaggacaaccgatcgagagaaggtgttatcgataaaatcatttcgcacggggta
aaagaaatcgtaggaaccttcgaaaaaaataaacggtttggatttgtagtaccggatgat
aagcattttaccaatgaggacgtatttgttaaaaaaagcgattggaaaaatgcggagacc
ggtgataaggtagttgtgcaaattacgaaatatccggaagaaggaaacaatgcagaggga
aaaattactgaaataatcagtcggtttggagaaacaggaggagacattaaagcgctgatc
agacagtacaatttattccagacctttccaagcagagtaaatgccgaggcaaaggctgtt
tctaaggtaaagcagcaaggagaagaaggcttcgaggctataagggaagaagaacgcaag
ggaagaacagatcttagacaaaagaaaattattaccatagacggggcagacgccaaagat
ttggatgatgccatttctattgaaaagttaagtaacggcaactatttgttaggagtacac
atagccgatgtaagccactatgtggcagaggacggacctatggataaggaggctctgaag
cgggggaccagtgtttatctggtagatcaggtcattcctatgctgccaaaagctctttcc
aatggcatatgcagtctgaatgaaggtgtggaccgattgactctttctatttccatggaa
atagactctacgggagaagtggtacgccacgatatttttaagagtattatccattcggct
caccgcatggtttatgatgatgtttcggatatgcttgaaaaaaatgcggtagatctgatt
tccaaatacgacgatatctataaagacattttgtccatgaaagaactggcagatattctt
cataagaggagagatctgagaggaagtctggattttgattttgacgaagcctatatcaca
ctggatgatgccggcattccggttacggtggaaacggcggaaaggcgtatcgcaaatcag
attattgaagaatttatgttgattgccaacgagacgatcgctgagcatttctattggatg
gaggttccgtttgtttatcgtgtgcatgaaaagcctgcaccggaccgaatggatgaattt
aaaaattttgtcagaggttttggtatcgccataaagggcaatactgaaaatattcatccg
aaaattctcagtgacatactgaaagaagtaaagggacagtcttatgaaaatgtagtgaat
acggttatgctccggtctatgaaaaaggcattctatgatgtctcctgtgacggccatttt
ggactgggcgttaaatattattgtcattttacttctcctatcaggcgttatccggattta
atcatacaccggatcataaaagaaatcattgatggcggtgtaagtgagaaaagaaacaag
cagcttcggaaaaaagcagatatggcctcagatctttcctcaaaggcagaacggcatgct
caagaattggaacgggaagtggaaaagcttaaaaagacggagtatatgtcataccatatc
ggggagtgctttgaaggtgtgatcagcggaattaccacatatggtttttatgtggagctg
cccaataccatagaaggtctggtcaggatagaaagcttgaaggatgactactatgattat
gagcaggctaaatatcgatttataggccaacggaccaataaaatttttacgttgggagat
aaggtaaagatacaggtattaagagcgaatgtagaggacagagagatcgattttgcgatg
gcagaggaaaaataa
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