Aurantimicrobium minutum: AUMI_19890
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Entry
AUMI_19890 CDS
T05175
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amin
Aurantimicrobium minutum
Pathway
amin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AUMI_19890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amin03400
]
AUMI_19890
Enzymes [BR:
amin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUMI_19890
DNA repair and recombination proteins [BR:
amin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AUMI_19890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAU99531
UniProt:
A0A173LYD5
LinkDB
All DBs
Position
sequence1:complement(1035903..1039499)
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AA seq
1198 aa
AA seq
DB search
MVFHGLSRALSRTRNISEALEYANKDADFSLVEGLNAPLLTSLIETRIEQGEPPVVLAVT
ATQRESERLSAALGSLLPHATVAEFPAWETLPHERLSPSPEIVGRRFDAIRQLRDWDGKT
PLVMITSVRGVLQPIADNLAEVDPIIVKVGSRGNDLLEIASRLVDLAYVRVDMVTRRGEF
AVRGGILDVFPPVADHPIRVDFFGDEIDSIRAFSVADQRSLDGDLDTVALPPSRELLLTE
PVRQRAREMEHEFPGISHMLSKIAEGIAVEGMESLTPALVDNLVPMTNYLPKGSAIALLS
PERIATRAINLTETNREFLDAAWNAASAGAQAPIDLSAGDFLTITQLREHYTGGPWWTFS
AFQHGPDASEPLPEELDLDEILTVRINAKAVPSFAGNIDGAAEHVESLLKNNWTVIVAAE
GHGLVERAGQVLAERNLAARMVEQLPGELEPAVAYLVQASVEAGFELEEAKLAVISESEF
YGRAASYDARAPRKLASRRKNVVDPLKLEAGDIVVHETHGIGKFLELVQREVSSGGRNAV
KTMREYLVIEYAPSKRGYPGDKLYVPTDQLDQLTRYVGGESPALSKMGGSDWGQAKNKAR
KAVRDIAVELVKLYSARMASKGFAFSPDTPWQRELEEAFPYVETVDQLTTIDEVKADMER
PIPMDRLISGDVGFGKTEIAVRAAFKAVQDGKQVAILVPTTLLVKQHFETFQERFAGFPV
HLRALSRFQTDKEAKETLAGMADGTVDVVIGTHRLLAQGVTFKDLGLVIIDEEQRFGVEH
KDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSEKQA
AAAIRREILREGQVFFVHNRVSSINRVAAQIAELVPEARVGVAHGQLSEHQLEQVIIDFW
ERKFDVLVSTTIIETGLDIANANTLIVDRADKYGLSQLHQLRGRVGRGRERAYAYLFYDE
TTPLSETAHDRLNALAANNELGSGIQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRM
IGEAVSAFRGDVAEGQTELRLELPVDARIPDDYVNSERLRLEAYQKLSVASGPLSREEQI
DQVFEELSDRYGEPPAQVHNLIAISRLRRRAHQSSLSEVVVMGSNLRITPVDLPDSLQVR
LARMYPGAKYVPAARVMTVPLPEDVDLIAWTGNLLEAIFPVPAKSDASSSSGSDESAR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggtatttcacgggctttcgcgcgccctttcgcgtacccgaaatatctctgaggctctg
gaatacgccaacaaagatgcggatttttctctcgtagaaggtctcaatgctcctctgctg
acctctttgattgagacccgcattgagcaaggtgagccgcctgtggtcttggctgtcacc
gcaactcaacgtgaatctgaacggctttctgccgctttaggaagtttgcttcctcacgcg
acggtggctgaattccctgcctgggaaaccctgcctcatgagcgcttgagtcccagccca
gaaattgtggggcgacgttttgatgccattcgccaattgcgggattgggatggcaagaca
ccgttggtcatgattacctccgtgagaggtgtgctgcaaccgattgccgacaatcttgcc
gaggtggaccccatcatcgtcaaggtgggctctcgcggaaatgatctgctcgagattgcc
tcacgcttagtggacttggcttatgtccgtgtcgatatggtcacccggcgaggtgagttt
gctgtgcgcggcggcatcttggatgtttttccgccggtggccgaccaccccattcgtgtg
gacttcttcggtgatgagattgacagcattcgggccttctcggtcgctgaccaaagatcc
ctcgacggtgatctggataccgtcgcgcttccgcctagccgtgaacttctcctgacagaa
cccgtgcgtcaacgtgcccgggagatggaacacgagttccccggtatttcccacatgctc
tccaagattgccgagggtatcgcggtggagggaatggagtctctcactccagcactggtg
gacaaccttgttccaatgaccaactatctgcccaagggttccgctatcgcgttgctctca
ccagaacgcatcgcgactcgtgccatcaacctcaccgagacaaaccgtgaattcctcgat
gcggcatggaatgcagcaagtgctggcgcacaagctcctattgatctttcggccggcgat
ttcctcaccatcacgcaactgcgtgaacactacacgggtggtccatggtggacatttagt
gccttccaacacggtcctgatgcgtcagaaccgctgcctgaagagctcgaccttgatgag
attctgaccgtacgaattaacgctaaagctgtccccagctttgctgggaacattgatggt
gctgctgagcacgtggagtcattactcaagaacaactggaccgtcattgtggcggccgaa
ggtcacggcctagttgagcgtgctgggcaagttctggctgaacggaatcttgctgcccgc
atggttgagcagcttcctggcgagctcgaacctgcggtggcatacctggttcaagcatct
gtggaggcagggtttgagctcgaggaagccaagcttgccgttatttcggaatctgagttt
tatggccgcgctgccagctatgacgcccgagcaccacgcaaactcgccagcagacgcaag
aacgtggttgacccgctcaaactcgaagctggcgacattgtcgttcacgaaactcacggt
attggtaagttccttgagcttgttcagcgtgaagtttcctccggtggacgcaacgccgtg
aagaccatgcgtgagtacttagttattgagtacgcacccagcaaacgtggctatcccggc
gacaaactgtatgtccctactgatcagcttgatcaactcactcgctatgttggcggagag
tctcccgcgctatccaagatgggtggcagcgactggggtcaagccaagaacaaagcacgc
aaagctgtccgcgacatcgcggtcgaactcgtcaagctctacagcgctcgcatggccagc
aaaggttttgccttcagccccgatacgccttggcagcgcgaactcgaagaagcctttccc
tatgtcgagaccgttgatcagctcacgaccatcgacgaagtcaaagcagatatggagcgg
cccatccccatggaccgtcttatctcaggtgatgtgggattcggaaaaacagaaatcgcg
gttcgcgcagcgttcaaggctgtccaagatggcaagcaagttgccatcttggtgcccacc
acgctgctggtgaagcaacacttcgagaccttccaagaacgctttgccggattcccggtt
cacttacgtgcactcagtcgtttccaaacagataaagaagccaaggaaaccttggctggc
atggccgatggcaccgtggacgtggtcatcggaacccaccgcctcttagcgcagggcgtc
accttcaaagaccttggcctcgtcatcattgacgaagagcaacgctttggtgtggagcac
aaggatgcactgaagaaactcaagaccaacgttgacattcttgccatgagtgcgaccccc
atcccacgcacactagaaatggctgtgaccggtattcgtgaaatgtcgacgttagccacg
ccacctgaggatcgtcaccctattctcaccttcgtgggcccttactccgagaagcaagca
gcggctgcaatccgccgagaaatcttgcgcgaaggccaagtcttctttgtgcacaaccgt
gtctcgagcatcaaccgggttgccgcgcagatcgcagaacttgttcctgaagcgcgcgtg
ggtgttgcacacggtcaactctccgaacaccaactcgaacaagtcattatcgacttctgg
gaacgcaaattcgatgtcttggtctccaccaccatcattgagaccggtctagatatcgcc
aatgccaacacgctcattgttgatcgagcagataaatatggcctgagccaattgcatcag
ttgcgtggtcgtgttggccgtggccgagaacgtgcctatgcctatctgttctatgacgaa
acaacgcccctgagtgaaacagcccacgaccggttaaacgcgctcgcagccaataacgaa
ctgggctctggtattcagattgcgctcaaagacctcgaaattcgcggtgccggtaacctt
ctcggcggagaacagtcaggtcatattgccggggtgggctttgacctctacctgcgcatg
attggcgaagcggtctctgccttccgcggcgacgtcgcagaaggccagactgagcttcgc
ctggaactgccggttgatgcccgcattcctgatgattatgtcaattcagagcgtttgcgt
cttgaggcgtatcaaaagctgtcggttgccagtggtcccctctcacgtgaagaacagatt
gatcaggtcttcgaagaactctccgatcgctacggtgaaccaccagctcaagttcacaac
ctgatagctatttccaggcttcgtcgccgagctcaccagtccagcttgagtgaggttgtc
gtgatgggttccaacctgcgcattaccccggttgatcttccggactcgctgcaggtgaga
ttggcgaggatgtatccaggagcaaaatatgttcccgctgctcgggtgatgactgttcct
ctacctgaggatgttgatttgattgcctggacagggaatctgctcgaagctatcttcccc
gttccagcgaagtcagatgctagttcttcttccggtagtgacgagagcgccagataa
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