Aminobacter sp. SS-2016: Amn_pb01800
Help
Entry
Amn_pb01800 CDS
T09420
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amis
Aminobacter sp. SS-2016
Pathway
amis03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Amn_pb01800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amis03400
]
Amn_pb01800
Enzymes [BR:
amis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Amn_pb01800
DNA repair and recombination proteins [BR:
amis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Amn_pb01800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
BBD41189
LinkDB
All DBs
Position
pANY103b:199045..201642
Genome browser
AA seq
865 aa
AA seq
DB search
MALETYRKKRNFGATPEPKGRQGRRRGNSFVVQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLSPGDKRLAVHVEDHPLAYGDFEGTIPKGEYGGGTVIVWDRGSWTPIGDGAGGYAKGQ
LDFELDGEKLHGRWHLVRMRGKPREKRENWLLIKGDDEFARDNGEDVLDELPLSVKTGRD
LAEVSGEAPGWSSKTGRIRGPKTLQHKATARKTGARKTGAQKSGTRKSGARGKAAHEAPT
AALADMPKARKAALPAFVEPALATLAASPPTGERWLHEIKFDGYRLQARLEDGDVFLSTR
SGLDWTAKFGKAVVDALAALPVTTALIDGELVVETGTGASDFSALQADLSAGRMDRFVFY
AFDLLHLEGYDLTQTPLSARKARLEQLIPEGNGIVRYSGHFEERGSLVLRHACRLSLEGV
VSKLRDGPYRSGRGKSWIKSKCSARQEFVVAGFVPSSVSRKAIGSLILGVFDGKELHHVG
RVGTGFTEAVARQLFERLHRLEIATSPFAGRLSADERRQARFVRPELVAEVEFRAWTADG
HLRHASFRGLRDDKPATEIVREIRKSGAKPPPPQRRTVKLTHPDRLYWPDDGVTKEGLAD
YYTDVWRHMAPFVVGRPLALLRCPNGITGEKFFQKHAWKGLNPNIGLIKDPKEKEGAPLI
SINDLDGLLGLVQSATLEIHPWGSTAADWEHPDMIVMDLDPGDGVSWLAVTEAAQEVRQR
LVDKGLAAFLKTSGGKGLHVVAPLKPKADWPEVKAFTKALADEMASDDPDRYVSTITKSK
RRGKILVDYLRNQRGATAVACYSTRARPGAAVSAPLSWEELGADIGPAHFTVENMPKRLE
ALASDPWEDFRAAAVPLAAKRRKAG
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaacctatcgcaaaaagcggaatttcggcgccacgcccgaacctaagggg
cggcaggggcgccgcagaggcaacagcttcgtcgtccagaaacatgatgccacacgcctg
cattacgatttccggctggagatggatggtgtgctgaaaagctgggcggtcaccaagggg
cccagcctgtcgcccggcgacaagcggctggcggtgcatgtcgaggaccatccactcgct
tatggcgatttcgaaggaacgatcccgaaaggcgaatatggcggcggcaccgtgatcgtc
tgggaccgcggcagctggactccgatcggcgacggcgcgggcggctatgccaaggggcag
ctcgatttcgaactcgacggcgagaagcttcacggccgctggcatctcgtgcgcatgcgc
ggaaaaccgcgcgagaaacgggaaaactggctgctgatcaagggcgacgatgaatttgcc
cgcgacaatggcgaggacgtgctggacgagctgccgctgtcggtgaagacggggcgggac
ttggcggaggtctcaggcgaagctcccggctggtcgtcgaagaccgggcgcatccgtggc
cccaagaccctgcagcacaaggcaacagcacggaagactggggcacggaagactggggcc
cagaagtcggggacgcggaagtcgggggcgcgcggcaaggccgcgcatgaggcgccgacc
gcagcacttgccgacatgccgaaagccagaaaggcagcccttcctgccttcgtcgagccg
gctcttgcaacccttgcggcgtcgccgccgacaggcgagcgctggctacacgaaatcaag
ttcgacggttaccgcctgcaggcgcggcttgaagatggcgatgtcttcctgtcgacgcga
agcgggctcgactggacggccaaattcggcaaggcggtcgtcgacgcgctcgcagcgctg
cccgtcaccacggcactcatcgacggcgaacttgtcgtcgagacgggcacgggcgcgtcg
gatttctccgccctgcaggccgacctgagcgcgggccggatggatcgcttcgtcttctac
gccttcgacctgctccatcttgagggatatgacctcactcagacgccgctctcggcacgc
aaggcacggctcgagcagcttattcccgagggcaacggcattgttcgctacagcggccat
ttcgaggaacgcggcagcctggtactgcgccacgcctgccgcctcagcctcgagggcgtg
gtgtcgaagctgcgcgatgggccctatcgcagcggccgcggcaagtcctggatcaagtcg
aaatgctcggcccgccaggagttcgtcgtcgccggtttcgtgccctccagcgtgtcgcgc
aaggctatcggctcgctcatcctcggcgtgttcgacggcaaggagcttcaccatgtcggc
cgtgtcgggaccggtttcaccgaagccgtggcaaggcagctctttgagcggctccatcgc
ttggagattgcgaccagcccatttgccggacgcctgtcggccgacgaaaggcgccaggcc
cggtttgtccggcccgagctggtggcggaagtggagttcagggcgtggaccgcggatggc
cacctgcgccacgcctcgtttcgcggcctgcgcgacgacaagccggcgacggagatcgtc
cgcgaaatcagaaagtccggcgcaaagcctccgccgccgcaacgccgcaccgtcaaactc
acccatcccgaccgcctctactggcccgatgatggcgttaccaaggaggggctggcggac
tattataccgatgtgtggcgccacatggcaccgttcgtcgtcggccggccgctggcgctg
ctgcgctgcccgaacggcataacaggcgaaaaattcttccagaagcatgcctggaaaggg
ttgaacccgaacatcgggctgatcaaggaccccaaggaaaaagaaggcgcgccgctgatc
agcatcaacgacctcgatggcctgctcggcctggtccagtcggcgacgctggaaattcat
ccctggggctcgacagcagcggattgggaacatcctgacatgatcgtcatggatctcgat
ccgggagacggcgtctcttggctggccgtcaccgaagcggcacaggaggtgcggcagcgg
ctggtcgacaaggggcttgccgccttcctgaaaacatcgggcggcaaaggcctgcacgtc
gtggcgccgctcaagccgaaagccgactggcccgaggtcaaggccttcaccaaggcgctc
gccgacgagatggcctccgacgatccggaccgctacgtctcgacgatcaccaaatcgaag
cggcgcggcaagatcctcgtcgactatctgcgcaaccagcgcggcgcgaccgccgtcgcc
tgctattcgacccgggcccgaccgggcgctgcggtgtcggcgccgctgtcgtgggaggag
ctcggcgcagacatcggaccggcccacttcaccgtcgaaaacatgcccaagcgcctcgaa
gccctggcaagcgatccctgggaggatttccgcgccgccgccgtcccgcttgcagcaaag
cgccgaaaggccggctaa
DBGET
integrated database retrieval system
