Alligator mississippiensis (American alligator): 102559048
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Entry
102559048 CDS
T03087
Symbol
THOC1
Name
(RefSeq) THO complex 1
KO
K12878
THO complex subunit 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03013
Nucleocytoplasmic transport
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102559048 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
102559048 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102559048 (THOC1)
03041 Spliceosome [BR:
amj03041
]
102559048 (THOC1)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
102559048 (THOC1)
Spliceosome [BR:
amj03041
]
Complex C
Other components
EJC/TREX
102559048 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102559048 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
102559048
NCBI-ProteinID:
XP_006277253
LinkDB
All DBs
Position
Un
AA seq
656 aa
AA seq
DB search
MSPPLFSLPEARLRFTNSTRDALHNKTLKPLLNAFNQIPGSESEKKCTLDQAFRVVVEEE
IINKAVCENLLAIISLSINGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVTT
WKSSTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEQESTLGQKHTEEKEEGLEVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPPDLKPIRPVRKRPAPEDF
LGRGPNKKILMGNEELTRLWNLCPDNMEACKSDSREYMPTLEEFFEEAIEQADPENMVEN
AYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKT
GEDEDEEDNDALLKENNESPEVQRDKPMTGEQIESFANKLGEQWKVLAPYLEMKDRDIRQ
IESDSEDVKMRAKQLLVAWQDQEGAHAIPENLITALNKAGLNDLAESLTNDTENNS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctgcgcttcacgaactcaacccga
gatgctctacataacaaaactctcaaacctttattgaacgccttcaaccaaattcctggg
agtgaaagtgaaaagaaatgtaccctggatcaagctttcagagttgttgtagaagaggaa
attataaacaaggctgtatgtgaaaatctcttggctatcatttctctttctatcaatgga
gtcacagaaggtatatgcacagcttcaactccttttgtgctcctgggagatgttctggat
tgccttcctttggatcagtgtgacaaaatcttcacttttgtggagaaaaatgttaccaca
tggaagtcaagtacattttattcagctggaaagaattacttgctacgaatgtgcaatgat
cttctaagaagattatccaaatcacagaacacagtcttctgtggaagaatacagctgttc
ctggctaggttgtttcctctttcagagaagtcagggcttaatttacaaagtcagtttaat
ctggagaatgtcacagttttcaataccaatgaacaggagagcactctgggacagaaacac
acagaggagaaagaggaaggactggaagtcgaagaaggtgaaatgggtgatgacgaagct
cctacaagttgttccattccaatagattacaacctgtatagaaaattctggtcacttcaa
gattactttaggaatccagtgcagtgctatgagaaggtctcatggaaaacttttcttaag
tattcggaagaagttttggctgtttttaaaagctacaagttggatgacacacaggcctca
cggaagaagctagaagagctgaaaacaggaggagagcatgtgtactttgcgaagttccta
actagtgaaaagctcatggatttgcagctgagtgacagtaacttccgccgtcacatcctg
ttgcagtatctgatattatttcagtatctaaaaggacaggtcaaatttaaaagttcaaac
tatgttctaactgatgaacaatccctctggattgaagatactacaaaagcagtttaccag
cttctttcagaaaaccctccagatggggaaaggttctcaaaaatggtagagcatatacta
aacactgaagaaaactggaactcgtggaaaaatgaaggctgcccaagctttgtgaaagag
agaccaccagatttgaagccgataagacctgtgagaaagagaccagccccagaggatttc
ctaggaagaggaccaaacaaaaaaattttgatggggaatgaggagctcacgcggctttgg
aatttgtgtcctgacaacatggaagcttgtaaatctgacagtagggagtacatgccaaca
ctggaggagttctttgaagaagctattgagcaggcagatcctgaaaacatggttgaaaat
gcgtacaaagctgtaaacaattctaactatggatggagagcattaaggttactggcacgc
agaagtccccacttcttccagccgacaaatcaacagtttaagagtttaccagaataccta
gaaaacatggtaatcaaattggccaaggaactgccgcctccttctgaagaaataaaaaca
ggcgaggatgaagatgaggaagataatgatgctttattaaaggaaaacaatgaaagtcca
gaagtccaacgggacaaacctatgacaggggaacaaattgagtcatttgctaacaagctg
ggagagcagtggaaggtgcttgctccgtacctagaaatgaaggaccgtgatataagacag
attgagtcagacagtgaagatgtgaagatgagagcaaagcaactgctggttgcctggcag
gatcaagagggggcacatgccatacccgagaacctgatcactgcactgaacaaagctgga
ttaaatgaccttgctgaaagcctaacaaatgatactgaaaacaatagttaa
DBGET
integrated database retrieval system
