Alligator mississippiensis (American alligator): 102570861
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Entry
102570861 CDS
T03087
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102570861 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amj03400
]
102570861 (LIG4)
Enzymes [BR:
amj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102570861 (LIG4)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102570861 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
Tox-REase-9
ATG17_like
Motif
Other DBs
NCBI-GeneID:
102570861
NCBI-ProteinID:
XP_006263347
LinkDB
All DBs
Position
Un
AA seq
914 aa
AA seq
DB search
MMSSTPPAQSSSKQTVASQVPFADLCSTLERMQKCKSRPEKTKYFKDFLDSWRKFHGALH
KKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRT
PAGSRGDAGDFAMTAYFVLKPRCPEQGKLTIEQVNELLDSIASNNAAKRKDLVKKSLLQL
ITRSSALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVS
LTDVSIALFSAFKPMLAAIANIQQIEKQMNNHCFYIETKLDGERMQMHKDGDVYKYFSRN
GYDYTQQFGPSPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRM
VEESDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNEVFTPVTGRMHVVHKTRGSTRKEV
VDALNEAIDNREEGIMVKDPTSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKG
LRGGMMSHFLCAVAEIPTPGGKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHKREP
PCNILCGTEKPEVYIEPCNSVIVQIKAAEIVTSDMYKTDCTLRFPRIEKIREDKEWHECM
TLSMLEQLRGRASGKLASKHLDVANDEPQEKKRKTLPKIKKIIGIAEQFKAPDLSNVSKV
SNVFEDVEFCVLTGTENHSKSDLESKIAECGGNVVQNPGPDTYCIIAGIENVRVKNVISS
NKHDVVRAEWLLQCFQTKMFVPWQPAFMIHMTPDTKLHFAREFDCYGDSYSADIDVAQLK
EVFSRVNNSIDAKMPLEVIGELEERYSWDSHPLSMFRRNTIYLDLYAVVNDPKTKICGTR
LTVRALDLRFYGAKVVSQLKEGVSHVVMGEDRARVKEIKMLRRTFEKKFKILSELWVTDS
IREGKLQSENQYLI
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcatccacacctcctgcacagtcatcctctaagcaaactgtagcatcacaagtg
ccttttgcagatctctgttcaactttagaacggatgcagaaatgcaaatcccgcccagag
aaaaccaagtatttcaaggattttttagattcatggaggaagtttcatggtgccctccat
aaaaaggagaaggatgtcacggactctttttatcccgcaatgcgacttattcttccacaa
ctggaaagagaaagaatggcttatggaataaaagaaaccatgcttgctaagctgtatatt
gaactacttaatttacccaaagaaggaaaagatgccctaaagcttttaaattatagaaca
ccagctggttcacgtggagatgctggggactttgcaatgactgcctactttgtattgaaa
cccaggtgcccagagcaaggcaaattgactattgaacaagtgaatgaacttctagattca
attgccagtaataatgctgctaaaagaaaggacctggtaaagaaaagtctccttcaatta
ataactcggagctcagcacttgaacaaaagtggttgatccggatgattataaaggatcta
aaacttggtgtgagtcagcaaactatattttccatttttcatcctgatgctgccgaatta
cacaatgtcacaaccgatctggagaaagtttgcagacagctgcatgacccttctgtatct
ctcactgacgtttccattgctttgttttctgcctttaaaccaatgcttgcagctatagct
aatatccagcaaattgagaagcaaatgaacaaccattgtttctacatagaaactaagcta
gatggtgagcgtatgcagatgcacaaagatggagatgtatacaaatatttttccagaaat
ggatatgattatacccagcagtttggcccatctcccctagaaggttcgttaactccattt
attcataatgtgtttaaaagtaacatacaaaactgcattcttgatggtgaaatgatggct
tataatcccaacacacaaactttcatgcagaagggaaacaaatttgacataaaaagaatg
gtggaggaatctgatctgcaaacttgcttttgcgtgtttgatgtgttaatggttaatgac
cagaagttgggtcatgagatactaagcaaaaggtatgagattctgaatgaggtatttacc
ccagtcacaggcagaatgcatgttgtgcacaaaacacgcggtagtacccggaaagaagtg
gttgatgctctgaatgaagcaatagacaacagggaagaaggaatcatggtaaaagatcct
acgtccatctacaagccggacaaacgcggagagggctggctgaaaatcaaaccagagtat
gtcactggcttgatggatgaattagatcttttaattgttggtggctactggggaaaaggg
ttgcgtggtggcatgatgtctcattttctgtgtgctgttgcagagattcccactcctggt
ggaaagccatctgtttttcactctatttgtcgtgttggttctggctatactatgaaggaa
ctttatgatcttggtctgaagctggctaagcactggaagccttaccataaaagagagccc
ccttgtaacattttatgtgggactgagaaacctgaagtctacattgaaccttgtaactca
gtcatagttcagattaaagcagcagaaattgttactagtgatatgtacaaaactgactgc
actttacgatttcctcgaattgagaaaataagagaggacaaggagtggcatgaatgcatg
actttgagtatgttagagcagctcagaggcagagcgtcagggaagctagcatcaaagcat
cttgatgtagctaatgatgaaccacaagaaaagaaacggaaaactctgccaaagattaag
aaaataattggtattgctgagcagtttaaagcccctgatctttctaatgtaagcaaggtg
tcaaatgtttttgaagatgttgagttttgtgttctgactggaacagaaaaccattcaaaa
tccgaccttgaaagtaaaattgcagaatgtggtggcaatgtagtacagaaccctggaccg
gacacttattgcatcattgcaggaattgagaacgtaagagtgaagaacgttatctcttcc
aataagcatgatgttgtgagagcagagtggcttttacagtgttttcaaaccaaaatgttt
gtaccatggcagcctgcttttatgattcacatgactccagacacaaaactacattttgcc
cgtgaatttgactgttatggtgacagctactcggcagatatagatgtggctcaactaaag
gaagtgttctcaagagtcaataatagtattgatgcaaagatgcctctggaagtaattggt
gaattggaagaacggtactcatgggacagtcatccactcagtatgtttaggcgaaacacc
atatacctggatctttatgctgttgttaatgatcccaagaccaagatctgtggaacaagg
ctaacagttagagctttggacctccgtttttatggagcaaaagttgtctcacagctaaag
gaaggagtgtcccatgtagttatgggagaagatcgtgcccgtgtgaaagaaataaaaatg
cttagaagaacatttgaaaaaaaatttaaaattctatctgaactgtgggtaacagattcc
ataagggaaggaaagctgcagagtgaaaatcaatacttaatttag
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