Alligator mississippiensis (American alligator): 102574905
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Entry
102574905 CDS
T03087
Symbol
CHD6
Name
(RefSeq) chromodomain helicase DNA binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102574905 (CHD6)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102574905 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
CHDCT2
HDA2-3
MUN
DUF3437
Motif
Other DBs
NCBI-GeneID:
102574905
NCBI-ProteinID:
XP_019356216
LinkDB
All DBs
Position
Un
AA seq
2732 aa
AA seq
DB search
MAPREVPASWLSRLKQLRHSPMSDASDTCECKSQDPFASSEDQNDLGHQVKASDFASQCQ
YLDEEPDEAMQKRMLSHNGMQGNGGGGTGVKKKRKKKDLGDQEVGEKGTVEKETKPKRKR
EPKEPKEPKKLKEPKKLKEPKQKETTKKPRKPREPKGPRDPKDRKSTSESTPKAKPKKAR
REQGPTPVEKKKKGKRKNEMPVESLELDHELLNPSVQSPEESIESADSQKRRSGRQVKRR
KYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASRMAQK
EVHVGDLAYEMEEFYVKYRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTE
PDEDLFNPDYVEVDRILEVAHTKDPDTEEEVTHYLVKWCSLPYEESTWELEEDVDQGKIK
EFESLQIPPEIRHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCIL
ADEMGLGKTIQSITFLSEIFLMGIRGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQI
SRQMIQQYEMLYRDVQGNPLPGIFKFHVVITTFEMILADCPELKKIQWRCVVIDEAHRLK
NRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKT
EEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSK
GANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSSDAPDFQLQAMIQAAGK
LVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDR
FCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV
YRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGAL
MDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQ
KWAKIADLDTDTKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRR
FNEKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKH
YKGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPRGRKGKKTKNQMLLPEIKNADWL
ATCNPEIVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAAVKAFEGTPARELDVLL
PDIDYVEIPVDWWNAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKLLSAEQ
GISDGVQDAADRGNAEKEESGGGKLEGLSKHEEAPSSCGEVTEKRDDHVAAQDGSDSDRS
CWPVSSALTARLRRLVTVYQRCNRKELTPRAEVLVPSNHGYWLQDEMFRRATEMDPMNKE
MQKRWTRREQADFYRTVSSFGVIYDQEKKAFDWTQFRAISRLEKKTDESLEKYFYSFVAM
CKNVCGLPLWKEDGPPDPEMYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLKLC
RPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMNDPQLSFLDAYRNYAQNKQTGIPG
AENLCCLYQTNSKLYSSPLYSQMERTSEPTENEAESQIKLENMDNIISQPEGSPQDGSSE
TFMCKGSNSDESSLADSLMCTMYDEKVYNSEQSSLTRDSPSCTELGSSTAKLSEDKLDGD
EDPSSCEAEAIRETSLDHLQIGCDQMGNQNEGGEVLCSAPDSEPPQSVPAEICEVLPQEK
GRGATQGAVSPELGTMEGVISIGLYGPSLHNYEIKLPPEKRFINLQQEKGLEDKSVPSQS
HSEEDDDEEEEDNSEMAADTVEGVTSSLEARVDGEPQVNVLALEEQHSVLSATNKACPEV
NSEVGSTGQGMSEGISKPGSREDDSTDQESPTKHSPNQPESEVFTSLPVRNLAVAIHLEL
PKTDPHRLGMDHWEANSTEQALCGTAQQLHGHKMKQDEHENKDEREKSCNTWRQDCPEKC
LEEESKSSTSVLPAEIDEFQDTRAPTIAQLLQEKTLYSFSEWPKDRVIINRIDNVCHAVL
KGKWPSSNQQFETQNLMPTSLLTSSEGNRNSFTDSEAPNPSFNDGALVSQESFLAPAFTK
DEGKHRRLYEFEIERDVKQRSLEQLAASHPHTPIVLNGWQDSAVDLSRTSDGSPGNACPF
PLNTSAPKLGAVNSLQGSLGMDLSGILQAGLIHPVTGQIVNGSLQRDDAAMRRRRGRRKN
VEGIDLVFLKERNLQTRLQDIQDQTQPPLSNSHPDGPVTTTSTPQTATATSIQAEKAVPN
KSLLDWLRQQSDYTLDVPGFGTNFSEKPKQRRQRCKDPSKLDINSLTGDERVPVVHTGTG
RRLGGAMAPALKELPRWLDAHLEYAVAADWADIVKLSGFIPESKFNRILTEPVLRDTGPR
RRGRRPRSELIKAPGVIADSSSGMGPLFMNGLIAGMDVVGLQNMRNMQSIPLTGLVGFPA
GFAAVSAGEDVKSTLSMLPMMLPGMASVPQMFGVGGLLNPPMTTTCTSTAPSLLTSTKNG
TSNAEKATEDKQSSQNVKKETLSEDKPGPSSFSDQTESAITTSSPVAFNPFLIPGMSPGL
IYPSMFLSPSIGMALPGIQQTRLSEVTNLESQKRKRKKTKGESANPEQETVVLSEKETTN
SQNCIEQTPPLSTEKEHDVPAEETESREINTN
NT seq
8199 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccagagaagttccagcctcgtggctgtcaaggttaaagcaactgagacattcc
ccaatgtctgatgcctcggacacctgcgagtgcaagtcacaggacccctttgccagcagt
gaggatcagaacgacctaggtcaccaggtgaaggcttctgactttgccagtcagtgccaa
tatttagatgaggagcctgatgaggccatgcagaagaggatgttgtcccataatgggatg
caaggcaatgggggtgggggcaccggggtgaagaagaaacggaagaaaaaggacctaggg
gaccaggaggtgggggagaaaggaacggtggagaaggagaccaaaccaaagaggaagaga
gaacctaaagaaccaaaagagcccaagaagctgaaggaacccaagaagctgaaggagccc
aagcagaaggaaacaaccaagaaacccaggaagccccgggagcccaaaggccccagggac
ccgaaagaccgaaagagcacctccgaatccacccccaaggcaaaacccaagaaggccagg
agggagcaaggaccaaccccggtggagaagaagaagaaaggaaagaggaaaaatgagatg
ccagtggagagtttggaattggatcatgagctgctgaacccctctgtgcagagccctgag
gagtccattgaatctgcagacagccagaagagacgctcaggacgccaggtaaagcgaagg
aaatacaatgaggacctggatttcaaagtggtggatgatgatggcgagacgatagcagta
ctgggggctgggcggacctctgcactctccgcatccactcttgcatggcaggcagaggag
cctcctgaggatgatgccaacataattgagaagatccttgcctccaggatggcacagaaa
gaggttcacgtgggagatttagcatatgagatggaggagttctatgtcaagtacaggaat
ttctcctacctacactgtaagtgggcaactttggaagagctggagaaggaccccaggatc
tctcagaagataaagcgctttcggaacaagcaagcacagatgaagcatattttcacggag
cctgatgaggatttattcaacccagactatgtggaggtggatcgaatcttagaagtggct
cacacgaaggaccctgacaccgaggaggaagttactcactacctggtaaaatggtgttca
ttgccatatgaggaaagcacctgggagctcgaggaagatgttgaccaagggaagattaaa
gagtttgaatccctccagattccaccagaaatcagacacatggaacgcccagcctctgag
tcctggcagaaactggagaagtcacgggaatataagaatagcaaccagttgcgggaatac
cagctggaggggatgaactggctactctttaactggtacaacaggaagaactgcatcttg
gctgatgagatgggcctggggaagactatccagtctatcaccttcctctcagaaattttc
ttgatgggcattcgtggccccttcctcatcattgccccactctccaccatcaccaactgg
gagagagagttccgcacctggacagaaatgaatgccattgtgtaccatggcagccagatc
agcaggcagatgatccagcagtatgagatgctgtacagagatgtgcagggtaaccctctc
cctgggatcttcaagtttcatgtggtcatcaccacttttgagatgattctagctgactgc
ccagaactgaagaagatccagtggcgctgtgtggtcatcgatgaggcccatcggctgaag
aacaggaactgcaaactgctagagggtctgaaacttatggccctggaacacaaggtgctg
ctgacaggaactcctctgcagaactcagtggaagaacttttcagcctgttgaatttcctg
gaaccacagcagttcccctcagagactgcctttctggaggagtttggagacctcaagaca
gaggagcaggtgaaaaagctgcagtcgatcctgaagcccatgatgctgcgacggctgaag
gatgatgtggaaaaaaacctggcacccaagcaggagaccatcatcgaggtagagctgacc
aacatccagaagaaatactaccgggccatcctggagaagaacttttccttcctgtcgaag
ggtgccaaccaacacaacatgcccaacctcatcaacacaatgatggagctacgcaagtgc
tgcaaccacccgtacctcatcaatggggcagaagagaaaatcctggaagatttccgtaaa
acacacagctcagatgcaccagacttccagctgcaggcaatgatccaggcagctggcaag
ctggtgctgattgacaagctgctccccaaactaattgctggtggacacaaggtgctgatc
ttctcccagatggtgcgctgccttgacatcctggaggactatctcatccagaggcgatac
acctatgaacggattgatggacgagtgcgtgggaacctgcgccaagctgctattgatcgc
ttctgtaagccagactcagatcgctttgtcttcctcttgtgcaccagggcaggaggcctg
ggcattaacctcacagctgctgacacctgcatcatatttgattcagattggaacccgcag
aatgacctccaggctcaagctcgctgccacagaatcgggcaaagcaaggcagtcaaggtc
tatcgcctgatcaccaggaactcctatgagcgggagatgtttgacaaagccagtctgaag
ctgggcctggacaaagctgttctgcaagacattaatcgcaagggcagcaccaatggggta
caacagctctcaaagatggaggtagaggacctattgcggaaaggtgcttatggggcttta
atggatgaagaagatgaaggttccaagttctgtgaggaagatattgatcagatcctgcag
cgcagaacacagacaatcactatccagtctgaggggaagggctccacctttgccaaggcc
agctttgtagcttcaggaaacagaactgacatttccttggatgatcccaacttctggcag
aagtgggctaagatagcagatctggacacagacacaaagaatgaaaaggagagtttagta
attgacaggccccgtgtccgcaagcagaccaaacactacaattcctttgaggaagatgag
ctgatggagttctctgagttggacagtgactctgatgagcggcccacacgttcacggcgc
ttcaatgagaagacacgacgttacctacgggctgagtgcttccgtgtagagaagaaccta
ctcatatttggctgggggcgctggaaggatatcctgacccatggtcggtttaagtggcac
ttgaacgaaaaggacatggagatgatttgtcgggccctcctggtctactgcgtcaaacac
tacaaaggagatgaaaagattaagagttttatctgggatctgatcactcctacgaaggac
ggacagaaccaggccctgcaaaatcactcaggattgtctgcccctgtgcccagaggaagg
aaggggaagaagaccaagaaccagatgcttctccctgagataaagaatgcagattggctt
gcaacctgcaaccctgaaatagtcctgcatgatgacagttataagaagcacctgaaacag
cactgtaacaaggtgctgctgcgggtgcggatgctgtactacctgaaagccgaagttcta
ggggaggcagctgtcaaagccttcgaagggactcctgccagggaactggatgtgttgctg
ccagatattgactatgtggagatccctgtggactggtggaatgctgaggctgataaatca
ctgctcatcggtgttttcaaacatggttatgagaggtacaatgccatgcgagcagatcca
gctctatgcttcctggagaaggttggcatgccagatgagaaactgctgtctgcggagcag
ggcatcagtgatggagtgcaagatgctgctgacagaggaaatgcagagaaggaagagagt
ggtggaggaaaactggaagggctgtcaaagcatgaggaggctcccagttcttgtggtgag
gtcactgaaaagcgggatgaccatgtggcagcccaggatggctccgactcagacagatcc
tgctggcctgtttcatccgccctcacagccagactgcgacggcttgtcactgtctaccag
cgctgcaaccgcaaagagctaaccccccgagctgaggtcttggttccaagtaaccatgga
tactggctgcaagatgagatgtttaggagagccactgagatggatccaatgaacaaggaa
atgcagaaaaggtggaccaggagggagcaagcagatttttaccgtaccgtctcgtccttt
ggtgtcatctatgaccaggagaagaaggcctttgactggacccagttccgagccatttcc
cgtctggagaagaaaacagatgagagcctagaaaagtacttttacagctttgtggccatg
tgcaaaaatgtctgtggtctcccgctatggaaagaggatggtcctccagaccctgagatg
tatgttgagccaattactgaagaacgtgctgcaagaacgctgtatcgaattgaacttctc
aggaaggtccgagagcaagtgctgaagtgtccccagctccatgagcggctcaagctctgc
aggccaagcctgtaccttccagtatggtgggaatgtggcaagcatgaccgggacttgctg
attggcacagccaaacatgggctgaaccgtactgactactacattatgaatgatccacag
ttgtcttttttagatgcatatagaaactatgctcagaataaacaaacagggattccagga
gcagaaaacctgtgctgcctatatcagactaactccaaactctatagctccccactgtat
agtcagatggaaagaactagtgaacccacagagaatgaagcagaaagtcagatcaagcta
gaaaacatggacaacattatctcacagccagaaggcagccctcaggatggtagcagtgaa
actttcatgtgtaaaggtagtaactctgatgagagctctctggcagactctttgatgtgc
acaatgtacgatgagaaagtgtacaacagtgaacaaagttctctcacccgggatagccca
agttgcacagagttggggagcagtaccgctaaactctcagaggacaaactagatggggat
gaggacccatccagctgtgaggcagaggccataagagaaacctccttggaccatttgcag
ataggttgtgaccaaatgggaaaccagaatgaaggaggtgaagtgttgtgttctgcccca
gacagtgagccaccccagagtgttccagcagagatctgtgaagtcttgccacaggagaaa
ggcagaggtgccacccaaggggcagtgtcaccagaacttggcaccatggagggggtcatc
agcataggactatatgggcctagtcttcataactatgaaataaaactcccccctgagaaa
agattcattaatttgcaacaagagaaaggcttagaggataaatcagtgccaagtcaaagc
cacagtgaggaagatgatgatgaagaggaggaagataattctgagatggcagcagacact
gtggaaggtgtgacaagctccttggaggccagggttgatggtgagccccaagttaatgtg
ctagccctagaggaacagcattctgtcctttctgctaccaacaaggcttgcccagaagtg
aacagtgaggtggggtccacagggcaggggatgtcagagggtatcagcaagccagggagt
agggaggatgacagcactgaccaggagagcccgacaaaacactcaccaaaccagcctgag
agtgaagtgttcacctctcttcctgtccggaacctggctgtagctattcatctggagctt
ccaaagacagatccccacaggttggggatggatcactgggaagccaactccacagagcaa
gcactatgcggtacagcccagcaactccatgggcacaaaatgaaacaagatgagcacgag
aacaaagatgagagagagaaaagttgcaacacctggagacaagattgtccagagaaatgt
ttggaggaggagagcaagagttccacatctgtccttccagcagagattgatgagtttcag
gacacccgggcacccaccattgcccagttgctgcaggagaagactctctactccttctca
gagtggcctaaggaccgagtgatcatcaaccgcatagataacgtctgtcatgccgtttta
aagggcaagtggccttcttctaaccagcagtttgaaacacaaaacttgatgcccacttca
ctgttaaccagcagtgaaggcaataggaacagcttcactgactcagaagctcctaatccc
agcttcaacgatggagcactagtctcacaggaaagcttcctagctcctgcctttacaaaa
gatgaaggaaagcatcggcggctgtatgaatttgagattgagagagatgtcaaacagaga
agtcttgagcagctagctgcctcccacccccacacccccatagtgctgaatggctggcaa
gactcagcagtggacctgtccagaacctctgatgggtctccaggaaatgcctgtcctttc
cctctgaacacaagtgcgcccaaattaggggcagtgaactccctccagggttcccttggc
atggacttgtctggcatccttcaggcaggattaattcatcctgtcacaggacagattgtt
aatggaagcctccagagagatgatgctgccatgaggagaagacggggcaggagaaaaaat
gtggaagggatagaccttgtcttcttgaaggagaggaatcttcaaacaaggctgcaggat
attcaggatcaaacccagcctccactgagcaactcccacccagatgggccagtcactact
acctcaactccacaaacggctacagctacaagcatccaggcagaaaaggctgttccaaat
aagagtcttttggactggctgagacagcagtcagactatacgcttgatgttcctggcttt
ggcacaaatttttcagagaagcccaaacaaaggaggcaacgctgcaaagaccccagcaaa
ttggacataaactcactcacaggggacgagcgagtacctgtggtacatacaggtacagga
cggaggttagggggagccatggcaccagcattgaaggaattgccaaggtggcttgatgca
cacttggagtatgctgttgcagcagactgggctgacattgttaagctttcaggattcata
ccagaaagcaagtttaatcgtatcctgactgaacctgtgctccgagacactgggcctcgc
cggagagggaggaggcccagaagtgaattgattaaagcccctggtgttatagcagattct
tcttcaggaatgggaccattattcatgaatggacttattgctggaatggatgtagttgga
cttcagaacatgagaaacatgcaaagcatccctttaactggtctggtggggtttcctgct
ggatttgcagcagtgtctgctggtgaggatgtcaaaagcactctgagtatgttgcctatg
atgttgccaggtatggctagcgtaccacaaatgtttggtgttggagggcttctcaaccca
ccaatgacaactacttgtacttcaactgctccaagtttgttaacaagcacaaaaaatggt
acatcaaatgcagaaaaagctactgaggacaaacagagtagccaaaatgtgaaaaaagaa
actctttctgaagacaagcctggtcctagttcattttctgatcagacagaatctgcaata
acaaccagtagtcctgtagcttttaatccatttcttataccaggaatgtcccctggactg
atctatccatcaatgtttctttcacccagtattggcatggcattgccaggtatacagcaa
accagactttctgaggtgacaaacctagaaagccagaagcggaagaggaagaaaactaaa
ggggaatcagcaaatccagaacaagaaactgttgtgctctctgaaaaagaaacaacaaac
agtcaaaactgtatagagcaaacgccacctttgtcaacagagaaagaacatgatgtacca
gcggaagagacggagtcaagagaaattaatacaaattag
DBGET
integrated database retrieval system
