Alligator mississippiensis (American alligator): 102576388
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Entry
102576388 CDS
T03087
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03013
Nucleocytoplasmic transport
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102576388 (UPF1)
03015 mRNA surveillance pathway
102576388 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102576388 (UPF1)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102576388 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102576388 (UPF1)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102576388 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102576388 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102576388
NCBI-ProteinID:
XP_006271078
LinkDB
All DBs
Position
Un
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQPGPGQGPG
AAGVGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVPAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccgcccgggccggggcagccggggccggggcagggcccgggc
gcggccggcgtggggcagggcccgccggggcccatcgaggcgcaggttaatggacctgat
ggcatcctacagaacggtgccgtggatgataatgtggctaaaaccagccaacttctggca
gagttgaactttgaagaagatgaagaagacacctattataccaaggatcttcctgtgcat
gcttgcagttactgtggcattcatgacccagcctgcgtggtttactgcaacaccagcaaa
aagtggttctgcaacgggcgtggcaatacatccggcagccacattgtaaaccatctggtg
agagccaaatgcaaggaggtaactctccacaaagacgggcctcttggagagactgtcttg
gagtgctacaattgtggatgccggaacgtgttcctccttggcttcattcctgcaaaggct
gactcggtagtagtcttgctgtgcaggcaaccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagaccgctgcttcctttcctgg
ctggtaaagattccctctgaacaggagcagctgcgagcccgtcagatcacagctcagcaa
attaacaaactggaggaactctggaaggaaaacccctctgccacccttgaagacttggaa
aaacctggtgttgatgaagaaccgcagcatgtcttacttcgatatgaggatgcttatcag
taccaaaatatctttggacctttagttaagctggaggcagactatgacaagaaactcaag
gaatcccagacccaggataacatcacagtgagatgggacctaggcttaaacaagaagaga
attgcttacttcactttgccaaagactgactcagatatgcgtcttatgcaaggagatgag
atctgcctgaggtataaaggagacctggcccctctgtggaaaggaattggtcatgttatc
aaagtcccggataattatggtgatgagatagccattgagctgagaagcagcgttggagca
cctgtggaggttactcataacttccaggtggattttgtttggaagtctacttcatttgac
agaatgcaaagtgctttaaaaacatttgcagtggatgaaacttctgtgtctggctacatc
taccacaagctgttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaag
cgttttacagcgcaaggactgcctgacctcaaccattctcaggtttatgctgtgaagact
gtcttgcagcgtcctctgagccttatccaaggtccccccggcacaggaaaaacagtgaca
tcagcaacgattgtctaccatctagctaggcagggcaatgggcccgtgttagtttgtgcc
ccaagtaacatagctgtggatcagctgaccgagaagattcatcagacgggactgaaagtg
gttcgcctgtgtgctaaaagtcgtgaggcaatcgattctcctgtatctttcttggcattg
cacaaccagatcagaaacatggacagtatgcctgagcttcagaaactgcagcagctgaaa
gatgaaactggagaattgtcatctgctgatgagaagcgttatcgtgcactgaagcgaaca
gcagaacgtgaattacttatgaatgcagatgttatctgctgcacgtgtgtgggagcaggt
gacccgagacttgccaaaatgcagtttcgctccattttaattgatgaaagcacgcaggct
actgaaccggagtgcatggtgcccgtggttcttggagcaaagcagctgatcctggtcggt
gaccactgccagctgggtcctgttgtgatgtgtaagaaagctgcgaaggcgggcctgtct
cagtctctctttgagaggcttgtggtgttggggatccgtccaatccgcctgcaagtgcag
tatcggatgcaccctgcacttagtgcttttccatccaacatcttctacgagggctctctc
cagaacggcgtcactgcagcggaccgtgtgaaaaagggatttgatttccagtggccccag
ccagataagccgatgttcttctatgtgacccaggggcaggaagaaattgccagttcaggc
acctcttacttgaacaggacggaagctgctaacgtggagaagataactacaaagctgttg
aaagctggtgccaaaccagatcagattggcattattacaccctacgagggccagcgatct
tacctggtgcagtacatgcagttcagtgggtccttgcatacaaagctctaccaggaagtg
gaaatcgcaagtgtcgatgctttccagggacgggagaaggattttattatcctttcttgt
gtaagagccaatgagcaccaaggaattggatttttaaatgatcccagacgtcttaacgtg
gctcttaccagagcaagatatggagtcattattgttgggaacccaaaggctctgtctaag
cagcctctttggaaccacctgctgaactactacaaagagcagaaggtgctggtagaggga
ccactgaacaacctccgggaaagcctcatgcagttcagcaagcctcgtaaacttgtcaat
accatcaaccccggtgcccgtttcatgacgactgccatgtatgacgcacgtgaagctatt
atcccaggatctgtctatgacaggagcagtcaagggcgcccatccaacatgtacttccag
actcacgaccagatcgggatgattagtgctgggcccagccacgtccctgcgatgaacatt
cctatccctttcaatctcgtcatgccacccatgccaccaccaggatacttcgggcaggcc
aacggcccggcggcaggacgcggcacacccaaagggaagactggccgtggcgggcgccag
aaaaatcgttttgggattcctggaactagccagtcgaaccttcccaacagtcaggcgagc
caagacgtggtgtcccagcctttctcccagggtccactgactcagggctatatctccatg
agtcagccgtcgcagatgagccagccaggactctcccagccagaattatcacaggacagt
taccttggtgatgagtttaaatctcagattgatgtggcgctgtcacaggattctacctac
cagggtgaacgtgcatatcaacacggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system