Ailuropoda melanoleuca (giant panda): 100466136
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Entry
100466136 CDS
T01329
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100466136 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aml03041
]
100466136 (DDX46)
Enzymes [BR:
aml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100466136 (DDX46)
Spliceosome [BR:
aml03041
]
Complex A
U2 snRNP components
U2 related factors
100466136 (DDX46)
Complex B
100466136 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
100466136
NCBI-ProteinID:
XP_011222837
Ensembl:
ENSAMEG00000017873
UniProt:
G1MHP8
LinkDB
All DBs
Position
3:23629406..23699760
Genome browser
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERERSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRSRS
KEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgggagtcacgccactatcggaaacgttcagcatcaagggggcgctctggaagt
cgttctagaagtcgctcaccctcagacaaaagaagtaaacgtggagatgacagacggtct
agaagcagagatagagacagaaggagagagaggtctcgtagcagggataaaagaagatct
cggtcaagagaccggaagcgccttaggcgttccagaagtagggagagagagagaagtcga
gagcgaagaagatctcgaagtcgagacaggagacgttctaggagtagaagccgaggccgg
cgatccagatcctccagtcctggcaataaaagcaagaaagctgagaataggtctaggtcc
aaagagaaaacagatagtggggaaagttctaaagagaagaaaaaagacaaagatgacaag
gaggatgaaaaagaaaaagatgctggcaactttgatcagaataagctggaagaagaaatg
agaaaacgaaaagaaagagtagaaaaatggcgagaagagcaacgtaaaaaggccatggaa
aacataggggaactgaaaaaggaaattgaagagatgaaacaagggaaaaaatggagttta
gaagatgatgatgatgatgaagatgatcccgcagaggctgaaaaggaaggaaatgaaatg
gagggtgaggagttagatccattagatgcttacatggaagaagtcaaagaggaagtaaag
aagtttaatatgagaagtgtgaaaggtggtgggggaaatgaaaagaagtctgggccaacg
gtcacaaaagttgtcactgtcgtgacaaccaaaaaagcagtggtagattctgataagaag
aaaggtgagctgatggagaatgaccaggatgccatggagtattcttcagaggaggaagaa
gttgatcttcagacagctcttacaggctatcagacaaaacagagaaagcttctagaacca
gtggaccatggaaaaattgaatatgaaccgttcagaaaaaacttttatgttgaagttcca
gaattagccaaaatgtctcaagaggaggtaaatgtatttcggttggaaatggagggcatt
actgtcaagggaaaaggttgccccaaaccaattaaatcatgggtccagtgtggcatttcc
atgaagatcttaaattctctcaaaaagcatggctatgaaaagcccacaccaatccaaacc
caggcgattcctgctataatgtctggacgagatttgattggtattgccaagacaggaagt
ggaaagaccattgcttttctgttacccatgtttagacacatcatggatcagaggtcatta
gaagaaggagaggggccaatagctgtcatcatgactccaactcgagaactggctttacaa
attactaaagaatgtaagaagttttcgaagaccctgggacttagagtggtgtgtgtttat
ggaggaacaggaatcagcgagcagattgctgagctgaaaagaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgttagcagctaacagtggtcgggtcacaaatctt
cgaagagtgacatatgttgttttagatgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggataatgtccgtcctgatcgacagacagttatgttttca
gctacttttcccagagctatggaggctttggctcgcagaatcctgagtaaacccattgaa
gtgcaggttggaggcaggagtgtggtttgctcagacgtggaacaacaagtgattgtgatt
gaagaagaaaagaaattcttgaagttacttgagcttcttggccattaccaagagtcggga
tctgtcattatatttgtggataagcaggaacatgctgatggtcttctgaaagatttgatg
agagcatcttatccttgcatgtctcttcatggaggcattgatcaatatgacagagatagc
atcataaatgactttaagaatgggacctgcaaacttctcgtagctacttccgttgctgcc
cgaggtctagatgtgaagcatctgattcttgtagtaaattacagctgccccaaccattat
gaggattatgtgcacagagcaggacggactggaagagcaggcaataaaggttatgcgtat
acttttatcacagaagatcaagctcgctatgctggtgacataattaaagctcttgaattg
tcaggaactgcagtgcctcctgacctggagaaactttggagtgatttcaaagatcagcag
aaagctgaagggaaaataattaaaaagagtagtgggttctctggtaagggattcaagttt
gatgaaacagaacaagctttggctaacgagaggaagaagttgcaaaaagcagctcttggt
ctgcaggattcagatgatgaggatgcggcagttgacattgatgaacaaattgaaagtatg
tttaattcaaagaagagagttaaggatatggctgcgcctggaacgtctagtgttcctgct
ccaactgcaggaaatgctgagaaattagaaattgctaagagattggctcttagaatcaat
gctcagaagaatttgggcattgagtctcaggtagatgtgatgcaacaggccaccaatgca
attctcagaggtggcaccatcctggctcccactgtgtctgccaaaaccattgcagagcaa
cttgctgaaaagatcaatgccaagctcaattatgtgcctttggagaaacaagaagaggag
agacaggatggtggacaaaatgaatcttttaagagatatgaggaagaattagagatcaat
gacttcccacagactgctaggtggaaagttacctctaaggaagctctgcagagaatcagt
gaatattctgaagccgcaattacaatcagaggaacatatttccctcctggcaaagaacct
aaggaaggagagcggaaaatttacttggcaattgaaagtgccaatgaactggctgtgcag
aaagcaaaggcagaaatcaccaggcttataaaagaagaactgattcggctgcaaaattca
taccaaccaacaaataaaggaagatacaaagtcttataa
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