Ailuropoda melanoleuca (giant panda): 100480150
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Entry
100480150 CDS
T01329
Symbol
UPF1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03013
Nucleocytoplasmic transport
aml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100480150 (UPF1)
03015 mRNA surveillance pathway
100480150 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100480150 (UPF1)
Enzymes [BR:
aml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100480150 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100480150 (UPF1)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100480150 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100480150 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100480150
NCBI-ProteinID:
XP_034513991
Ensembl:
ENSAMEG00000011474
LinkDB
All DBs
Position
4:13744459..13780525
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPXGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcactttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcactgacttcaccctc
cccagccagacgcagacgcccccgggtggccccnngggccccggaggaggtggcgcgggc
ggcccggtcggcgcgggcgcgggtgctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaactttgaagaggatgaagaagatacctattacacgaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgtggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggccgactctgtagtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcacagcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccaccttggaggac
ctggagaagccgggtgtggacgaggagccgcagcacgtcctcctgcggtacgaggacgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcgactcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcgcccgtggaggtgactcataac
ttccaggtggatttcgtgtggaagtcaacctcatttgataggatgcagagtgcgctgaag
acgtttgccgtggatgagacctccgtctcgggctacatctaccacaagctgctcgggcac
gaggtggaggatgtgatcatcaagtgccagctgccgaaacgcttcacggcacaggggctc
cccgacctcaaccattctcaggtgtacgccgtcaagactgtgctgcagagaccgctgagt
ctcatccagggaccaccaggcacggggaagacggtgacctctgccaccatcgtctaccac
cttgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagccgtggat
cagctgactgagaagatccaccagactgggctaaaagttgtgcggctctgcgccaagagc
cgcgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gacagcatgccggagctgcagaagctgcagcagctgaaggacgagacgggggagctgtcc
tctgctgatgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccaaggctcgccaagatg
cagttccggtccattttaattgatgagagcacccaggccactgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaagcagccaaagctggactctctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctgcaggtccagtatcggatgcaccctgcgctc
agcgccttcccgtccaacatcttctacgagggctctctccagaatggcgttactgcagcg
gaccgagtgaagaagggatttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaggctgccaacgtggagaagatcaccacgaagttgctgaaggcgggtgccaagcctgac
cagattggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagcgtagacgcg
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaatgagcaccaa
ggcatcggatttttaaatgaccccagacggcttaatgtggccctgaccagagcgaggtat
ggggtcattattgtgggcaacccaaaggccctgtccaagcagccgctctggaaccatctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctatgat
cggagcagccagggccggccctcgaacatgtacttccagacccatgaccagatcggcatg
atcagtgcaggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccccccatgccaccaccagggtattttggacaagcaaacgggccagccgcaggccgg
ggtacgccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggacgtggcgtcgcagccg
ttctcccagggcgccctgacccagggctacatctctatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
