Ailuropoda melanoleuca (giant panda): 100482586 Help Entry 100482586         CDS       T01329                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism aml  Ailuropoda melanoleuca (giant panda) Pathway aml03030   DNA replication aml03410   Base excision repair aml03420   Nucleotide excision repair aml03430   Mismatch repair Brite KEGG Orthology (KO) [BR:aml00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100482586 (LIG1)    03410 Base excision repair     100482586 (LIG1)    03420 Nucleotide excision repair     100482586 (LIG1)    03430 Mismatch repair     100482586 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:aml03032]     100482586 (LIG1)    03400 DNA repair and recombination proteins [BR:aml03400]     100482586 (LIG1) Enzymes [BR:aml01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100482586 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      100482586 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      100482586 (LIG1) DNA replication proteins [BR:aml03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     100482586 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      100482586 (LIG1) DNA repair and recombination proteins [BR:aml03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      100482586 (LIG1)    NER (nucleotide excision repair)     Other NER factors      100482586 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      100482586 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PucR DDR Motif Other DBs NCBI-GeneID:  100482586 NCBI-ProteinID:  XP_019653811 Ensembl:  ENSAMEG00000015091 LinkDB All DBs Position 12:31559123..31593944 Genome browser AA seq 912 aa AA seqDB search MQRSIMSFFYPKKEGKVKKPEKETSNSVRETEPPPKVALKERNGEVPESDSPVKRPGRKV ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPATFPESSPSLSNTSPVDISPAGIPK RRTARKQLPKRTIQDVLGEQGRDEDREAKRKKEEEAETPPESLTEPEVTQKKEAEGDQPA TPPETSPAEPPPDGASEPEVAEKQEAREENPAKPPARAPKPVSSFFAPRKPATKKEGKEE GPGTARQEETKGPLDPSSYNPAKSNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLR MVETLSNLLRSVVALSPPDLVPVLYLSLSRLGPPQQGLELGVGDGVLLKAVAQATGRQLE SVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFTKFRDIARLAGSASTAKKMDVI KGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAVVDAGKGR TAEARKTWLEEQAMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHP TRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPK IKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNG ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTL DVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEES EELQAICKLGTGFSDEELEEHHRKLQALVLPTPRPYVRADGAVAPDHWLDPSAVWEVKCA DLSLSPIYPAARGLVDGEKGISLRFPRFIRIREDKKPEEATTSAQVASLYRKQSQIQNQQ GADLDSDSEDFY NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt atgcagcgtagtatcatgtcatttttctaccccaagaaggagggcaaagtgaaaaaacca gagaaggagacctccaacagcgtcagagagacggaaccacctccaaaggtagcactgaag gagcggaatggggaggtgcccgagagtgattctccagtgaagaggccagggcgcaaggtg gcccgggtcctgggcagtgaaggggaggaggaagatgaagccctcacgccctccaaaggc cagaagcctgccccgggctctccacaagtctcccctcccagccctgccacatttcccgag agcagcccttccctctccaacacctctcctgtggacatctccccagcagggatccccaag cggcgcacagctcggaagcagcttcctaagcggacaatacaggatgtcctgggggagcag ggcagggacgaggacagagaggccaagaggaagaaggaggaagaagctgagaccccaccg gaaagcctcacagagcctgaagtgacccagaagaaagaagcagaaggggaccagcccgcg acgccccctgagacctccccagcagagcccccaccagacggcgcctcggagcctgaggtg gccgagaagcaggaggctcgggaggagaacccagccaagccgcccgccagagctcctaag ccggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaagggaaagaggag ggacctggcacggcaagacaggaggagaccaagggacccctggacccctccagctacaat cctgccaagagcaattaccatcccatcgatgatgcatgctggaagccaggccagaaggtc ccttacctggctgtggcccggacatttgagaagattgaggaagtttctgctcggctccgg atggtggagacgctgagcaacttgctgcgttctgtggtggccctgtcgcctcccgacctc gtcccggtcctctacctcagcctcagccgcctcgggccaccccagcagggcctggagctt ggcgtcggtgacggcgtcctgctcaaggccgtggcccaggccacggggcggcagctggag tctgtcaaggccgaggcagccgagaagggcgacgtggggctggtggccgagaacagccgc agcacccagagactcatgctgcccccgcctgcgctcaccgctgccggtgtcttcaccaag ttccgagacatcgcccggctggccggcagcgcttccacagccaagaagatggacgtcatc aaaggcctctttgtcgcctgccgtcactcggaagcccgatacatcgccagagccctgagt ggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctctcccaggccgtg agcctcacgcccccaggccaagaattccctccggccgtcgtggatgctgggaagggcagg acagcagaggcccgaaagacgtggctggaggagcaagccatgatcctgaagcagacattc tgcgaggtgcccgacctggaccggatcatccccgtgctgctggagcacggcctggagcgc ctcccggagcactgcaagctgagcccaggggttcccctgaaaccgatgctggcacacccc acgcggggtgtcagcgaggtcctgaaacgcttcgaggaggcagctttcacctgcgagtac aaatacgacgggcagagggcgcagatccacgtcctggaaggcggggaggtgaagatcttc agcaggaatcaggaagacaatactggaaagtacccggacatcatcagccgcatccccaag attaaactcccgtcggtcacatccttcatcctagacacagaagccgtggcttgggaccgg gaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggaggtggac gcggcagagatccaggtgcaggtgtgtctgtatgccttcgacctcatctacctcaatgga gagtccctggtgcgtgagccgctttcccgacgccggcagctgctccgggagaatttcgtg gagacggagggcgagtttgtcttcgccacctccctggacaccaaggacacagaccagatt gccgagttcttggagcagtctgtgaaagactcctgcgaggggctcatggtgaaaaccctg gacgtcaatgccacctatgagattgccaagagatcacacaactggctcaagctgaagaag gactacctcgatggcgtgggtgacaccctggacctcgtggtgatcggcgcctacctgggc cgtggcaagcgggccggccgctacgggggcttcctgctggccgcctacgacgaggagagt gaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggagctggaagag catcaccggaagctgcaggccctggtgctacccaccccacgcccctacgtccgggcagat ggggctgtggcccccgaccactggctggaccccagcgccgtgtgggaggtgaaatgtgcc gatctctccctgtcccccatctaccctgctgcccgcggcctggtggatggtgagaagggg atctcccttcgcttccctcggtttatccgcatccgtgaagacaagaagccggaggaggcc accaccagtgcccaggtggcctcgctgtacaggaagcagagtcagattcaaaaccagcag ggcgcggacttggactccgactcggaagatttctactag

DBGET integrated database retrieval system