Amycolatopsis mediterranei S699: AMES_3220
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Entry
AMES_3220 CDS
T02190
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amm
Amycolatopsis mediterranei S699
Pathway
amm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMES_3220 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amm03400
]
AMES_3220 (lig)
Enzymes [BR:
amm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMES_3220 (lig)
DNA repair and recombination proteins [BR:
amm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMES_3220 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFO76756
LinkDB
All DBs
Position
complement(3519829..3521841)
Genome browser
AA seq
670 aa
AA seq
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MAADDASLVPAWLEPMLAKADGGRLRTGPEWAYEYKLDGYRAAMRIAPDGTTVLTSRNNI
DFTAEFTDLEGVLAPALDGRAAYLDGEIVVYGEDGRIDFERMQERRGRYVRHQSGPKGRE
FTDVPVRFLAFDLLRLGDESLLAMPYDERRRLLAELPMPDPYRVSVVRAVTFDELAADRR
TPADFLAHAASAGYEGVVAKLRSSAYHPGQRPDSWLKHPLVRTQEVIVCGWRPGQNSFTG
TLGGLLLGAHDPATGDLVYIGDVGTGFSQATRADLRAQLEAMERRTHPFVTTPPREDTAR
ARWVEPRLVGEIVYRQFTRGGRVRHTAWRGLRHDKDPAEVLAPRAVPHEPAGAAPAPPSP
SSSASASASPSPEPAGQRITVQAGDRRLTLSNLDKVLYPADGFTKGEVINYYSRVAAVLL
PHLAGRPVTFIRYPNGVDGQKWFEKNAPKGAPDWLRTVRLAGTGGTIDYPLLDDLPGLVW
AANMAALELHVPQWTVEQGTRQPPDRLVFDLDPGPGTTIVDCCRVAERLHDVLVADGLTP
YAKTSGSKGMQLYCGIRTDDPAAPSAYAKRLAQRLAKETPESVTAVMAKAQRTGRVFIDW
SQNNPAKTTVAPYSLRGRDHPTASTPVTWDEVRACRHVNRLTFTADDVLDRLEDHGDLLA
GLIEDRAPLG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagacgacgcgtcgctcgtcccggcctggctggagccgatgctcgccaaggcc
gacggcgggcggctgcgcaccggcccggagtgggcctacgagtacaaactggacggttac
cgggcggccatgcggatcgccccggacggcaccaccgtgctcaccagccgcaacaacatc
gacttcaccgcggagttcaccgacctcgagggcgtgctcgcccccgcactggacggccgc
gccgcctacctggacggcgagatcgtcgtctacggcgaggacggccggatcgacttcgag
cggatgcaggagcgccgcggccgctacgtccggcaccagagcgggccgaaggggcgggag
ttcaccgacgtcccggtccggttcctggccttcgacctgctccggctcggggacgagagc
ctgctggccatgccgtacgacgagcgccgccggctgctggccgagctgccgatgcccgat
ccgtaccgcgtttcggtggtccgcgcggtcaccttcgacgagctcgccgccgatcgccgc
acccccgcggacttcctcgcccacgccgcgtccgccgggtacgagggcgtcgtcgcgaaa
ctgcggtcgtcggcctaccaccccgggcagcggccggattcgtggctcaagcacccgctg
gtccggacgcaggaggtgatcgtctgcggctggcggcccgggcagaacagcttcaccggc
accctcggcgggctcctgctcggcgcgcacgaccccgcgaccggcgacctggtctacatc
ggcgacgtcggcaccggcttcagccaggccacccgcgccgacctgcgggcgcagctggag
gcgatggagcgccgcactcacccgttcgtgacgacgccgccgcgggaggacaccgcccgc
gcccgctgggtggagccgcggctggtcggcgagatcgtctaccgccagttcacccgcggt
ggccgcgtccgccacaccgcctggcggggcctgcgccacgacaaggacccggccgaggtc
ctggcgccgcgcgcggttccgcacgaacccgccggcgcggctccggcaccgccttcgccc
tcgtcgtcggcttcggcgtcggcgtcgccttcacccgagccggcggggcagcggatcacc
gtccaggccggcgatcggcggctcacactgtccaatctggacaaggtgctgtacccggcg
gacggcttcaccaagggcgaggtgatcaactactactcccgcgtcgcggcggtgctgctg
ccgcacctcgccgggcggccggtgacgttcatccgctacccgaacggcgtcgacggccag
aagtggttcgagaagaacgccccgaagggcgccccggactggctgcgcacggtgcgcctg
gccggcacgggcggcacgatcgactacccgctcctggacgacctcccgggcctggtgtgg
gcggcgaacatggcggcgctcgagctgcacgttccccagtggacggtggagcagggcacc
cggcagcccccggaccggctggtgttcgacctggacccgggcccgggcacgacgatcgtc
gactgctgccgggtggcggagcgcctgcacgacgtcctggtcgccgacgggctgacaccg
tacgcgaaaacgtcgggctccaagggaatgcagctctactgcggaatccgcacggacgac
ccggcggccccgtcggcgtacgccaagcggctcgcccagcgcctggcgaaggagacaccg
gagtcggtgacggcggtgatggcgaaggcccagcgcacgggccgggtgttcatcgactgg
agccagaacaacccggcgaagacgacggtggccccgtattcgttgcgcggccgcgaccac
ccgacggcgtcgaccccggtgacgtgggacgaggtgcgagcttgccgccacgtgaaccgc
ttgacgttcacggcggacgacgtcttggaccgcctcgaagaccacggcgatctgctggcg
ggactgatcgaggaccgcgcgccgctggggtga
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