Amycolatopsis mediterranei S699: RAM_42210
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Entry
RAM_42210 CDS
T01822
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amn
Amycolatopsis mediterranei S699
Pathway
amn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RAM_42210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amn03400
]
RAM_42210
Enzymes [BR:
amn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RAM_42210
DNA repair and recombination proteins [BR:
amn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RAM_42210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEK46909
UniProt:
A0A9R0P5Z1
LinkDB
All DBs
Position
complement(9042159..9045713)
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AA seq
1184 aa
AA seq
DB search
MSGLLTAILPDPALRGVVERAGAPLLELQGPIAARQLVAAALAADDGAGKPVLAVTATGR
EADELTASLKALIGESRVADFPSWETLPHERLSPRADTVGRRLEVLHRLKTGDDDLRVVV
ATVRSLIQPMAPGLGSLAPVDLVVGEEQSFEGLLERLVELAYTRVDMVEKRGEFAVRGGI
LDLFGPTAQHPVRVKFWGDEVSEIRAFAVSDQRSLPGDIPRVTAPPCRELLLTRPVREKA
AELAKTYESDAHLAEMLTKLADGIPVEGMEALIPVLCEGELELLTDAMPAGTHVLLTDPE
KIRARAADLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRGLDEIASHAQDTKRAWWTIT
QLTSEDPDVYRVSVEAAPAYRGELERATADLRAHTAAGGTAVLVVAGHGTAARAVEQFSA
ADVPASLAGDGLKGAPAPGVVTVTCGGLTDGFISPERALVVLTEADLTGRGSGAGTSTKD
LTTKMPSRRRNAVDPLALKSGDYVVHEQHGIGRFVEMVQRTVAGATREYLLLEYGSSKRG
HPGDRLFVPTDQLDEVSKYVGGELPTLNKLGGSDWKNTKARAKKAVKEIAAELVQLYAAR
QAAPGHAFGPDTPWQGELEDAFPFTETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKT
EIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFHERMRSFPVTIKGLSRFTNKTESDII
LEQLASGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMS
ATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYV
HNRVSSIEKAARRIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGL
DISNANTLLVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQ
NTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDAFRRHAGAEPA
EEEEMADVRVDLPIDAHIPHDYVPGERLRLEAYRKIAAAPDTEGLDAVREELIDRYGQPP
APVNRLLSVARFRHTCREAGVTEVAVQGNTIRFAPLPLLDSQMVRLKRLYPKAVFKAVTN
TVSVPKPTEGPAGGRIGAPTLRDEELLEWCTKLLVQLTKKPAAV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtccggactcctcaccgccatccttcccgacccggccctgcgcggcgtggtcgagcgc
gccggcgcgccgctgctcgagctgcagggcccgatcgccgcccggcagctcgtcgccgcc
gcgctcgcggccgacgacggcgccggcaagcccgtgctcgccgtcaccgccaccggccgc
gaggccgacgagctgaccgcgtcgctcaaggcgctcatcggcgagagccgggtcgccgac
ttccccagctgggagacccttccgcacgagcgcctctccccgcgcgcggacaccgtcggc
cgccgcctcgaggtgctgcaccggctgaagacgggcgacgacgatctgcgcgtcgtcgtc
gccaccgtccgcagcctgatccagcccatggcgcccgggctcggctccctcgccccggtc
gacctcgtcgtcggcgaagaacagagtttcgaaggcctcctcgaacggctggtcgagctg
gcctacacccgcgtcgacatggtcgagaagcgcggcgagttcgccgtccgcggcggcatc
ctcgacctgttcgggcccaccgcgcagcaccccgtccgggtgaagttctggggcgacgag
gtcagcgagatccgggcgttcgccgtctccgaccagcggtcgctgcccggcgacatcccg
cgggtcaccgcgccgccgtgccgcgagctgctgctcacgcggccggtcagggagaaggcc
gcggagctggcgaagacgtacgagtccgacgcgcacctggccgagatgctcaccaagctc
gccgacggcatcccggtcgagggcatggaggcgctcatcccggtcctctgcgaaggcgag
ctcgaactgctcaccgacgcgatgccggccggcacccacgtgctgctcaccgaccccgag
aagatccgcgcccgcgccgccgacctggtccgcaccggccaggagttcctcgaagcgtcc
tggacgacggccgcggccggtggccaggctccgatcgacctcggcgcgtcggcctaccgc
gggctcgacgagatcgcctcccacgcgcaggacaccaagcgcgcctggtggacgatcacc
cagctgaccagcgaagaccccgacgtctaccgcgtctcggtcgaggccgcgcccgcgtac
cgcggcgagctcgagcgcgcgacggcggacctgcgcgcgcacacggcggcgggcggcacg
gcggtgctcgtcgtcgccgggcacggcaccgcggctcgcgcggtcgagcagttctcggcc
gccgacgtcccggcctccttggcgggcgacggcctgaagggcgcgccggcgccgggcgtc
gtcacggtcacctgcggcggcctgaccgacggcttcatctcgccggagcgcgcgctggtc
gtgctcaccgaggcggacctgaccggccgcggctcgggcgccggaacgtccacaaaggac
ctcacgaccaagatgccgtcccggcggcgcaacgccgtcgacccgctcgcgctcaagtcc
ggtgactacgtcgtgcacgagcagcacggcatcggccggttcgtcgagatggtccagcgg
acggtcgcgggcgccacccgggagtacctgctgctggagtacggctcgtcgaagcgcggg
caccccggcgaccggctgttcgtgccgaccgaccagctcgacgaggtgtccaagtacgtc
ggcggcgagctgccgacgctgaacaagctcggcggctccgactggaagaacaccaaggcc
agggccaagaaggcggtcaaggagatcgccgccgagctcgtccagctgtacgcggcgcgc
caggccgcgcccgggcacgcgttcggcccggacacgccgtggcagggcgagctggaggac
gctttcccgttcaccgagacgaacgaccagctcgcggccatcgacgaggtcaaggccgac
atggaacgcggcgtcccgatggaccgcgtcatctgcggcgacgtcggctacggcaagacg
gagatcgccgtccgcgccgcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctg
gtgccgacgacgctgctcgcccagcagcacctgaacaccttccacgagcggatgcgctcg
ttcccggtgacgatcaagggcctgtcccggttcacgaacaaaaccgagtcggacatcatc
ctggagcagctcgcgagcggcgaggtcgacatcgtcatcggcacgcaccgcctgctgcag
acgggtattcgctacaaggacctcgggctcgtgatcgtcgacgaggagcagcgcttcggc
gtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtcgacgtgctcaccatgtcg
gcgacaccgatcccgcgcaccctggagatgtcgctggccggcatccgcgagatgtcgacg
atcctgaccccgccggaagaccgccacccgatcctgacctacgtcggcgcgtacgacgac
aagcaggtcggcgcggccatccggcgcgagctgctgcgcgacggccaggtcttctacgtc
cacaaccgcgtctcctcgatcgagaaggcggcgcggcggatccgcgagctggtgccggag
gcgcgggtcgtcaccgcgcacgggcagatgaacgaagacaagctcgaaaagatcatccag
ggcttctgggagaacgagtacgacgtcctggtgtgcacgacgatcgtcgagacgggtctc
gacatctcgaacgccaacacgctgctggtcgagcgcggcgatctgctggggctggcgcag
ctgcaccagctgcgcggccgggtcgggcgcgggcgggagcgcgggtacgcgtacttcctg
tacccgccggaggccccgctgaccgagaccgcgcacgaccgcctggcgacgatcgcccag
aacaccgagctgggcgcgggcatggcggtcgcgatgaaggacctcgaaatccgcggcgcg
ggcaacatcctcggggcggagcagtcggggcacatcgccggtgtcgggttcgacctgtac
gtgcggttggtcggcgaagcggtggacgcgttccggaggcacgcgggtgccgagccggcg
gaggaagaggagatggccgacgtccgcgtcgacctcccgatcgacgcccacatcccgcac
gactacgtgcccggcgagaggttgcgcttggaggcgtaccgcaagatcgcggcggcgccg
gacaccgagggcctcgacgcggtccgcgaagagctcatcgaccggtacggccagccgccg
gccccggtcaaccggctgctgtcggtggctcgcttccggcacacctgtcgtgaagcgggt
gtgacggaggtggcggtccagggcaacacgatccggttcgcaccgctgccgttgctggat
tcgcagatggtgcgcttgaagcggctgtacccgaaggcggtgttcaaggcggtgacgaac
acggtatcggtgccgaagccgacggagggcccggccggcgggcggatcggcgcgccgacg
ttgcgggacgaagaactgctggagtggtgcacgaagctgctggtccagctgacgaagaag
cccgcggctgtgtag
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