Acetomicrobium mobile: Anamo_0678
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Entry
Anamo_0678 CDS
T02151
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amo
Acetomicrobium mobile
Pathway
amo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Anamo_0678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amo03400
]
Anamo_0678
Enzymes [BR:
amo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Anamo_0678
DNA repair and recombination proteins [BR:
amo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Anamo_0678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFM21326
UniProt:
I4BVL9
LinkDB
All DBs
Position
647209..650340
Genome browser
AA seq
1043 aa
AA seq
DB search
MQVYIDKLWDVDLSSWMKGDTVCLQARGAARPWICRNAEAKLIALFSDSTQALDFYSDWK
ALFKEDDIIYLPELPLTADKAGQSALWVNRGELFEKWRHEDGKKVLVSTPGSLVTPLSFA
NDSFTIVAGEVIGRDNLARWLQASGYEPVDLVWSPGQLSIRGSLVDLFDPVYRYPIRVEF
FDDEVISIRAFDSETQKSIAHHGQIEIHRISGNRVAFPIKLLPSNCRVLLFEPKDVEAQA
DIYSWLWRRLCDDDRSLPLIPDWQEVYRVIATLPHLRISSSLEGATYRFDILREPYFKGQ
LENANAYLNKWQSEGYEISLYAEARYLEEWAAQRGINLTPRMISAGFVDLRRKYVALSQS
AIMGIEQPIMMDQSYRKPPSDWQDSLEVGQYVVHEDYGVAIFRGTNYINGSEYLVLEYGG
QKRLLVPAYQLYKITPYEGIYGVEPQLDRLDRQSWKRNLQKARDAAHKVAQDLISLYASR
ELKKGFVFPKDGEMSKHFEVTFPYHETADQLKAIEEIKNDMEKPVPMDRILVGDVGFGKT
EVAMRAAIKAVEGGKQVAVLVPTTLLSEQHYESFVSRIGDMPIRIEQLSRFETKAKQQSI
LKETAEGRVDILIGTHRLLQGDVRFKDLGLVIIDEEHRFGVRQKELLKKLRTEVDVLSIS
ATPIPRTLYMALSGIRDISLLSTPPKDRQPVITVVGPWRDDLVREAILKEISRDGRVFFV
HDRIRGIEKRAKRLQMLVPEAKVGIAHGQLPKGELENAMLKFLSGEINVLVCTTIIESGL
DIAKANTLIVDNAHMFGLSQLHQLRGRVGRRNRQAFAYMLYPADKSLTKEAMQRLEAIAE
CNQLGAGYRLALRDLEIRGGGNLLGVEQHGQTEKVGFQLYYKLIENAMRKLKGEDIQGLS
MDIKVPLSIPEDYIPQDSLRMALYRRLLRDLSIKDIDEMEKELADRFGPLPEEMKSLLNV
TRLKAGLPHFGVEEMTVDADEIILRGKDKGLLSLVGGKPGWMTRGDRAVGPGGIVGLKVL
VKYMTSAFKSGREMVEEWDRDAI
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagtgtacattgataaactttgggatgtcgacttaagcagttggatgaagggcgat
actgtgtgcctccaggccaggggggcagccaggccgtggatttgcaggaatgcggaagct
aagctcatagcgcttttttcggatagcactcaggcgctggatttttactccgactggaaa
gcattgttcaaagaagacgacatcatatatttgccagagttgcccttaactgcggacaag
gcaggtcaatctgccctgtgggtcaataggggagaattgttcgaaaaatggcgtcatgag
gatggcaagaaggtcttggtttcgacccccggctctctcgtgacgcctctttcctttgca
aacgatagttttaccatagtagctggagaagttattggaagagacaacctggcacggtgg
ttacaggctagcggttatgagccggtagacctcgtctggagcccgggacagctttcgatc
aggggaagcctcgtggatctcttcgatcccgtttacaggtatcccattagggtggaattc
ttcgatgacgaagtaataagcatccgagccttcgatagtgagactcaaaagagcatagcc
catcatggacaaatagagatacatcgcatttccggaaacagggtagccttccccatcaag
ctgcttcccagcaattgcagagttcttctcttcgaaccaaaggatgtagaagcacaggct
gatatatactcatggctttggaggcgcctgtgtgacgatgaccgttctttacctctcata
ccagactggcaagaagtctacagggtgattgccacgttacctcacttgagaatttcttct
tcgcttgagggcgctacatatcgtttcgatatactaagagaaccctactttaaagggcaa
ttggaaaatgccaatgcctacttgaacaaatggcaatccgaaggttatgaaatttctctg
tatgcagaagcgagatacttggaagagtgggctgcccaaaggggcataaacttgacgcct
cggatgataagcgcagggtttgtggatttgaggcgcaaatatgtcgccctgtcgcaatcc
gccatcatgggcatagagcaacccatcatgatggatcaaagctaccgtaagccgccgtca
gactggcaggacagcctggaagtcggccaatatgtcgtgcatgaggattacggcgttgcc
atttttagaggcacaaattacataaatggttcggaatatctggtcttggagtatggtggc
cagaagcggcttctggtacctgcttaccaactttacaagataacgccctatgagggcatc
tatggtgtggagcctcagctggatcgccttgacaggcaatcctggaagagaaatcttcag
aaagccagagatgcggcccataaggtcgcccaagacttgatctctttatatgcgtcaagg
gaactcaagaagggatttgtctttcccaaagacggtgaaatgtcaaaacactttgaagtc
acctttccctatcacgagaccgcggatcagctaaaggccatagaggagataaaaaacgac
atggaaaagcctgtccccatggacaggatattggtaggagatgtggggtttggaaagact
gaggtagccatgcgagctgccataaaggcggtggagggtgggaaacaggtggcagtcttg
gtccctacgacgttgctttcagaacagcattacgagagcttcgtctcaaggataggcgat
atgccaataaggattgaacagctgtctcgttttgagacgaaggcgaagcagcaaagtata
ctgaaggaaacggcagaaggacgtgtggacatactgatcggtactcatcgcttactgcag
ggtgacgtgcgatttaaggatctgggtctggtcataatcgatgaggaacacaggttcggc
gtcaggcaaaaggaattgttaaaaaagcttcgaactgaagtcgatgtattatccatatcg
gccacccccattcccaggacgctttatatggcattgtccggcataagggacatatccctc
ctgagcactccacccaaagatagacaacccgtgattaccgtggtaggaccatggagggat
gatctggttagagaggcaatcctgaaggagatatcccgcgatggtcgggtcttttttgtt
cacgaccgcataaggggcatagaaaagagggccaaaaggctgcagatgcttgttccagag
gccaaggtgggcatagctcacgggcagcttccaaagggcgaattggaaaatgcaatgttg
aagtttttaagcggtgaaatcaacgtacttgtctgtacgacaatcatagaaagcggcttg
gacatcgctaaggccaataccttaattgtagacaacgcccacatgttcgggttatctcaa
ttgcaccagcttcgcggcagagttgggagaagaaataggcaggcctttgcctatatgctg
tacccggcagataaatctctaactaaggaggccatgcagagacttgaggccatagcggag
tgcaatcaattgggagcgggttacaggttggcgctgagggacctggagatcaggggcgga
ggcaatttgcttggcgtagagcaacacggtcagacggaaaaggtcggatttcaactttat
tacaagttgatagaaaatgctatgagaaagctaaaaggggaagatattcaaggcctttcg
atggacataaaggtgccgttaagcattccggaggactacattccccaggattcgcttcga
atggcgctttatagaagattgcttagagatttaagcattaaggatattgacgaaatggaa
aaagagttggccgacaggtttggaccactgccggaggagatgaaatccttgttgaacgta
acaaggttaaaggcggggttgcctcacttcggcgttgaagagatgacggtagatgcagac
gaaatcatcttacgaggaaaagataagggattgcttagccttgtgggcggcaaaccaggt
tggatgaccagaggtgatcgtgccgttgggccgggcggcatcgttggcctgaaggtactg
gtcaaatacatgacatcagcctttaagtcgggtagggagatggtcgaggaatgggatcga
gacgcgatatag
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