Amycolatopsis methanolica: AMETH_5951
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Entry
AMETH_5951 CDS
T03230
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMETH_5951 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_5951 (mfd)
Enzymes [BR:
amq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMETH_5951 (mfd)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMETH_5951 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
Glyco_tran_WecG
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AIJ26043
UniProt:
A0A076MZL2
LinkDB
All DBs
Position
complement(6134622..6138191)
Genome browser
AA seq
1189 aa
AA seq
DB search
MSDPQLSGLLSAVLPDPALRAVIERAGAPLLELSGATATRQLVVAALASDAGAGRPVLAV
TATGREAEELTAALASLIGADAVADFPSWETLPHERLSPRADTVGRRLDVLHRLHTDRAP
RVVVATVRSLIQPMAPGLGSLAPVELRVGEEEEFEPLLERLVELAYTRVDMVEKRGEFAV
RGGILDIFPPTADHPYRVEFWGDEVSEVRAFAVSDQRSLPGELSSVHAPPCRELLLTPDV
KARAGELAEQYEADAQLAEMLTKLAGGIPVEGMEALIPVLCEGELELLTDAMPEGTHVVL
ADPEKIRARAADLVRTGQEFLEASWMSAAGGGQAPIDLGASAYRNLEEVAKHAGETGRPW
WTLSQLTSEDADVIRIGVEASPAYRGDLERAVTDLRAHLAADGTAVLVVAGHGTAARAVE
QLSTAGISATHAADGLLDQPAPGIVTVACGGLAEGFVAPELRLVVLTEADLTGRGATAGS
ATRDLGTKMPSRRRNAVDPLALRPGDYVVHDQHGIGRFVEMVQRTVGGATREYLVLEYAS
SKRGHPGDRLYVPSDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKEIAAELVQL
YAARQASPGHAFGADTPWQRELEDAFPFTETNDQLAAIDEVKADMERGVPMDRVICGDVG
YGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFAGRMASFPVTIKGLSRFTDKIE
AEATLAGLADGTVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDV
LTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVAAAIRRELLRDGQ
VFYVHNRVSSIEKAARRIRELVPEARVVTAHGQMNEEKLEKIIQGFWEREYDVLVCTTIV
ETGLDISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPENPLTETAHDRLA
TIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDVFRRSAG
EAPAEEEELREVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAVDDDELRAVEEELIDRY
GQPPAPVQRLLAVARFRHVCRSAGVTEVSAQGNNIRFAPLELMDSQMVRLKRLYPKANYK
AAMRMVTVPKPTEGPAGGRMGAPALRDDALLDWCTKLLVNLTKKPAPVG
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgacccgcagttgtccggcctgctctccgccgtcctgcccgaccccgccctgcgc
gcggtgatcgagcgggccggcgcgcccctgctggagctctccggcgccacggccacccgc
cagctggtggtcgccgcgctggcgtccgacgccggggcgggccgcccggtgctggccgtc
accgccaccggccgcgaggccgaggagctgacggccgcgctcgcgagcctgatcggcgcc
gacgcggtggccgacttcccgtcctgggagacgctgccgcacgaacggctgtccccgcgc
gcggacaccgtcggccgccgcctggacgtgctgcaccgcctgcacaccgaccgcgccccg
cgcgtggtggtggccacggtccgcagcctgatccagccgatggcgccggggctgggcagc
ctcgcgccggtcgaactgcgcgtcggcgaggaggaggagttcgagccgctgctggagcgg
ctcgtcgagctggcctacacgcgcgtggacatggtcgagaagcgcggcgagttcgccgtc
cgcggcggcatcctggacatcttcccgccgacggccgaccacccgtaccgcgtcgagttc
tggggcgacgaggtcagcgaggtccgcgcgttcgcggtgtcggaccagcggtcgctgccc
ggcgagctgtcctccgtccacgccccgccgtgccgggagctgctgctcacgccggacgtg
aaggcccgcgccggcgagctggccgagcagtacgaggccgacgcgcagctcgccgagatg
ctcaccaagctggcgggcggcatcccggtcgagggcatggaggccctcatcccggtgctg
tgcgagggcgagctggagctgctgaccgacgcgatgccggaaggcacgcacgtcgtgctg
gccgacccggagaagatccgcgcccgcgcggccgacctggtgcgtaccggccaggagttc
ctcgaagcgtcgtggatgtccgcggccggcggcgggcaggcgccgatcgacctgggcgcg
tcggcgtaccgcaacctggaagaggtcgccaagcacgccggcgagaccggccgtccgtgg
tggacgctgtcacagctgaccagcgaggacgccgatgtcatccggatcggcgtggaggcc
tcgcccgcctaccgcggtgacctggagcgcgcggtcaccgacctgcgggcgcacctggcc
gcggacggcaccgcggtgctcgtggtggccgggcacggcaccgccgcccgggcggtggag
cagctgtccaccgccgggatttccgcgacccacgcggcggacggcctgctcgaccagccc
gcgccgggcatcgtcacggtcgcctgcggtggtctcgccgaggggttcgtcgcgcccgag
ctgcggctggtcgtgctcaccgaagccgacctgaccggccgcggcgccaccgccggctcg
gcgacgcgcgacctgggcacgaagatgccctcccgccgccgcaacgcggtcgacccgctg
gcgctcaggcccggcgactacgtggtgcacgaccagcacggcatcggccggttcgtggag
atggtgcagcgcaccgtcggcggcgccacccgcgagtacctggtgctggagtacgcctcg
tccaagcgcggtcaccccggcgaccggttgtacgtgccgagcgaccagctcgacgaggtg
tcccgctacgtcggcggcgagctgcccacgctgaacaagctgggcggctcggactggaag
aacacgaaggccaaggcgcgcaaggcggtcaaggagatcgcggccgagctggtgcagctc
tacgcggcccgccaggcgtcgccggggcacgcgttcggcgcggacacgccgtggcagcgg
gaactggaggacgcgttcccgttcaccgagaccaatgaccagctcgccgcgatcgacgag
gtcaaggcggacatggagcgcggcgtgccgatggaccgcgtcatctgcggtgacgtcggc
tacggcaagaccgagatcgccgtgcgcgcggcgttcaaggcggtgcaggacggcaagcag
gtcgcggtgctggtgccgaccaccctgctggcgcagcagcacctcaacacgttcgccggc
cggatggcgtcgttcccggtgaccatcaagggcctgtcccggttcaccgacaagatcgag
gcggaggcgacgctggccggcctcgccgacggcaccgtcgacatcgtgatcggcacgcac
cgcctgctgcagaccggcatccgctacaaggacctcggcctggtcatcgtcgacgaggag
cagcggttcggcgtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtcgacgtg
ctgaccatgtcggccacgccgatcccgcgcacgctggagatgtcgctcgccggcatccgt
gagatgtccacgatcctgaccccgccggaggaccggcacccgatcctgacctacgtcggc
gcgtacgacgacaagcaggtcgccgccgccatccggcgcgagctgctgcgcgacggccag
gtgttctacgtgcacaaccgggtgtcctcgatcgagaaggcggcgcgccggatccgcgag
ctggtgcccgaggcgcgggtggtcaccgcgcacggccagatgaacgaggagaagctcgaa
aagatcatccagggcttctgggagcgcgagtacgacgtgctggtctgcaccacgatcgtg
gagaccggcctggacatctcgaacgcgaacacgctgatcgtcgagcgcggcgatctgctc
gggcttgcgcagctgcaccagctgcgcggccgcgtcgggcgcgggcgggagcgcggctac
gcgtacttcctgtacccgccggagaacccgctgaccgagaccgcgcacgaccggctcgcg
acgatcgcgcagaacaccgagctgggcgcgggcatggcggtcgcgatgaaggacctggag
atccgcggcgccgggaacatcctcggcgccgagcagtccgggcacatcgcgggcgtcggg
ttcgacctgtacgtgcggctggtcggcgaggcggtcgacgtgttccgccgcagcgccggc
gaggcgcccgccgaggaggaggagctgcgcgaggtccgcgtcgatctgccggtggacgcg
cacatcccgcacgactacgtccccggcgagcggctgcgcctggaggcctaccgcaagatc
gcggccgccgtggacgacgacgagctgcgcgcggtcgaggaggagctgatcgaccgctac
ggccagccgcccgctccggtgcagcggctgctcgcggtggcgcggttccggcacgtctgc
cgctcggcgggcgtcaccgaggtgtccgcacagggcaacaacatccgcttcgcgccgctg
gagctgatggactcgcagatggtgcggctgaagcggctgtacccgaaggcgaactacaag
gccgcgatgcggatggtgacggtgccgaagccgaccgaaggcccggcgggcggccgcatg
ggcgcgcccgcgctgcgtgacgacgccttgctggactggtgcaccaagctcctggtcaac
ttgaccaagaaacccgcccccgtcggttag
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